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Results: 1 to 20 of 134

1.

Genome-wide analysis of the context-dependence of regulatory networks.

Papp B, Oliver S.

Genome Biol. 2005;6(2):206. Epub 2005 Jan 27. Review.

PMID:
15693953
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Genome-wide location and function of DNA binding proteins.

Ren B, Robert F, Wyrick JJ, Aparicio O, Jennings EG, Simon I, Zeitlinger J, Schreiber J, Hannett N, Kanin E, Volkert TL, Wilson CJ, Bell SP, Young RA.

Science. 2000 Dec 22;290(5500):2306-9.

PMID:
11125145
[PubMed - indexed for MEDLINE]
Free Article
3.

Transcriptional regulatory networks in Saccharomyces cerevisiae.

Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Joseph Z, Gerber GK, Hannett NM, Harbison CT, Thompson CM, Simon I, Zeitlinger J, Jennings EG, Murray HL, Gordon DB, Ren B, Wyrick JJ, Tagne JB, Volkert TL, Fraenkel E, Gifford DK, Young RA.

Science. 2002 Oct 25;298(5594):799-804.

PMID:
12399584
[PubMed - indexed for MEDLINE]
Free Article
4.

Genome-wide analysis of transcriptional dependence and probable target sites for Abf1 and Rap1 in Saccharomyces cerevisiae.

Yarragudi A, Parfrey LW, Morse RH.

Nucleic Acids Res. 2007;35(1):193-202. Epub 2006 Dec 7.

PMID:
17158163
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Computational discovery of gene modules and regulatory networks.

Bar-Joseph Z, Gerber GK, Lee TI, Rinaldi NJ, Yoo JY, Robert F, Gordon DB, Fraenkel E, Jaakkola TS, Young RA, Gifford DK.

Nat Biotechnol. 2003 Nov;21(11):1337-42. Epub 2003 Oct 12.

PMID:
14555958
[PubMed - indexed for MEDLINE]
Free Article
6.

Opening windows to the genome.

Whitehouse I, Tsukiyama T.

Cell. 2009 May 1;137(3):400-2. doi: 10.1016/j.cell.2009.04.026.

PMID:
19410536
[PubMed - indexed for MEDLINE]
Free Article
7.

A stress regulatory network for co-ordinated activation of proteasome expression mediated by yeast heat shock transcription factor.

Hahn JS, Neef DW, Thiele DJ.

Mol Microbiol. 2006 Apr;60(1):240-51.

PMID:
16556235
[PubMed - indexed for MEDLINE]
8.

Deciphering gene expression regulatory networks.

Wyrick JJ, Young RA.

Curr Opin Genet Dev. 2002 Apr;12(2):130-6. Review.

PMID:
11893484
[PubMed - indexed for MEDLINE]
9.

Reconstructing genetic networks in yeast.

Zhang Z, Gerstein M.

Nat Biotechnol. 2003 Nov;21(11):1295-7. No abstract available.

PMID:
14595359
[PubMed - indexed for MEDLINE]
10.

The promoter connection.

Werner T.

Nat Genet. 2001 Oct;29(2):105-6.

PMID:
11586286
[PubMed - indexed for MEDLINE]
11.

A genome-wide analysis in Saccharomyces cerevisiae demonstrates the influence of chromatin modifiers on transcription.

Steinfeld I, Shamir R, Kupiec M.

Nat Genet. 2007 Mar;39(3):303-9.

PMID:
17325681
[PubMed - indexed for MEDLINE]
12.

Transcriptional networks: reverse-engineering gene regulation on a global scale.

Chua G, Robinson MD, Morris Q, Hughes TR.

Curr Opin Microbiol. 2004 Dec;7(6):638-46. Review.

PMID:
15556037
[PubMed - indexed for MEDLINE]
13.

Genome adaptation to chemical stress: clues from comparative transcriptomics in Saccharomyces cerevisiae and Candida glabrata.

Lelandais G, Tanty V, Geneix C, Etchebest C, Jacq C, Devaux F.

Genome Biol. 2008;9(11):R164. doi: 10.1186/gb-2008-9-11-r164. Epub 2008 Nov 24.

PMID:
19025642
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Assembly of regulatory factors on rRNA and ribosomal protein genes in Saccharomyces cerevisiae.

Kasahara K, Ohtsuki K, Ki S, Aoyama K, Takahashi H, Kobayashi T, Shirahige K, Kokubo T.

Mol Cell Biol. 2007 Oct;27(19):6686-705. Epub 2007 Jul 23.

PMID:
17646381
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

CYGD: the Comprehensive Yeast Genome Database.

Güldener U, Münsterkötter M, Kastenmüller G, Strack N, van Helden J, Lemer C, Richelles J, Wodak SJ, García-Martínez J, Pérez-Ortín JE, Michael H, Kaps A, Talla E, Dujon B, André B, Souciet JL, De Montigny J, Bon E, Gaillardin C, Mewes HW.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D364-8.

PMID:
15608217
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Sfl1p acts as an activator of the HSP30 gene in Saccharomyces cerevisiae.

Galeote VA, Alexandre H, Bach B, Delobel P, Dequin S, Blondin B.

Curr Genet. 2007 Aug;52(2):55-63. Epub 2007 Jun 27.

PMID:
17594096
[PubMed - indexed for MEDLINE]
17.

A TATA binding protein regulatory network that governs transcription complex assembly.

Huisinga KL, Pugh BF.

Genome Biol. 2007;8(4):R46.

PMID:
17407552
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Genome-wide analysis of the cis-regulatory modules of divergent gene pairs in yeast.

Su CH, Shih CH, Chang TH, Tsai HK.

Genomics. 2010 Dec;96(6):352-61. doi: 10.1016/j.ygeno.2010.08.008. Epub 2010 Sep 6.

PMID:
20826206
[PubMed - indexed for MEDLINE]
Free Article
19.

Data mining for regulatory elements in yeast genome.

Brazma A, Vilo J, Ukkonen E, Valtonen K.

Proc Int Conf Intell Syst Mol Biol. 1997;5:65-74.

PMID:
9322017
[PubMed - indexed for MEDLINE]
20.

Periodic epi-organization of the yeast genome revealed by the distribution of promoter sites.

Képès F.

J Mol Biol. 2003 Jun 20;329(5):859-65.

PMID:
12798677
[PubMed - indexed for MEDLINE]

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