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Results: 1 to 20 of 83

1.

An ontology for cell types.

Bard J, Rhee SY, Ashburner M.

Genome Biol. 2005;6(2):R21. Epub 2005 Jan 14.

PMID:
15693950
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

The Gene Ontology project in 2008.

Gene Ontology Consortium.

Nucleic Acids Res. 2008 Jan;36(Database issue):D440-4. Epub 2007 Nov 4.

PMID:
17984083
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Semi-automated ontology generation within OBO-Edit.

Wächter T, Schroeder M.

Bioinformatics. 2010 Jun 15;26(12):i88-96. doi: 10.1093/bioinformatics/btq188.

PMID:
20529942
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Unintended consequences of existential quantifications in biomedical ontologies.

Boeker M, Tudose I, Hastings J, Schober D, Schulz S.

BMC Bioinformatics. 2011 Nov 24;12:456. doi: 10.1186/1471-2105-12-456.

PMID:
22115278
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

COBrA: a bio-ontology editor.

Aitken S, Korf R, Webber B, Bard J.

Bioinformatics. 2005 Mar;21(6):825-6. Epub 2004 Oct 28.

PMID:
15513995
[PubMed - indexed for MEDLINE]
Free Article
6.

GO PaD: the Gene Ontology Partition Database.

Alterovitz G, Xiang M, Mohan M, Ramoni MF.

Nucleic Acids Res. 2007 Jan;35(Database issue):D322-7. Epub 2006 Nov 10.

PMID:
17098937
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

The BRENDA Tissue Ontology (BTO): the first all-integrating ontology of all organisms for enzyme sources.

Gremse M, Chang A, Schomburg I, Grote A, Scheer M, Ebeling C, Schomburg D.

Nucleic Acids Res. 2011 Jan;39(Database issue):D507-13. doi: 10.1093/nar/gkq968. Epub 2010 Oct 28.

PMID:
21030441
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Deriving an ontology for human gene expression sources from the CYTOMER database on human organs and cell types.

Michael H, Chen X, Fricke E, Haubrock M, Ricanek R, Wingender E.

In Silico Biol. 2005;5(1):61-6.

PMID:
15972006
[PubMed - indexed for MEDLINE]
9.

GOLEM: an interactive graph-based gene-ontology navigation and analysis tool.

Sealfon RS, Hibbs MA, Huttenhower C, Myers CL, Troyanskaya OG.

BMC Bioinformatics. 2006 Oct 10;7:443.

PMID:
17032457
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

The Ontology Lookup Service: more data and better tools for controlled vocabulary queries.

Côté RG, Jones P, Martens L, Apweiler R, Hermjakob H.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W372-6. doi: 10.1093/nar/gkn252. Epub 2008 May 8.

PMID:
18467421
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

The Gene Ontology (GO) project in 2006.

Gene Ontology Consortium.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D322-6.

PMID:
16381878
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Ontology for vector surveillance and management.

Lozano-Fuentes S, Bandyopadhyay A, Cowell LG, Goldfain A, Eisen L.

J Med Entomol. 2013 Jan;50(1):1-14.

PMID:
23427646
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

An ontology of fungal subcellular traits.

Kumar TK, Crow JA, Wennblom TJ, Abril M, Letcher PM, Blackwell M, Roberson RW, McLaughlin DJ.

Am J Bot. 2011 Sep;98(9):1504-10. doi: 10.3732/ajb.1100047. Epub 2011 Aug 29.

PMID:
21875969
[PubMed - indexed for MEDLINE]
Free Article
14.

OBO-Edit--an ontology editor for biologists.

Day-Richter J, Harris MA, Haendel M; Gene Ontology OBO-Edit Working Group, Lewis S.

Bioinformatics. 2007 Aug 15;23(16):2198-200. Epub 2007 Jun 1.

PMID:
17545183
[PubMed - indexed for MEDLINE]
Free Article
15.

Anatomics: the intersection of anatomy and bioinformatics.

Bard JB.

J Anat. 2005 Jan;206(1):1-16. Review.

PMID:
15679867
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013.

Hastings J, de Matos P, Dekker A, Ennis M, Harsha B, Kale N, Muthukrishnan V, Owen G, Turner S, Williams M, Steinbeck C.

Nucleic Acids Res. 2013 Jan;41(Database issue):D456-63. doi: 10.1093/nar/gks1146. Epub 2012 Nov 24.

PMID:
23180789
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

An ontology for Xenopus anatomy and development.

Segerdell E, Bowes JB, Pollet N, Vize PD.

BMC Dev Biol. 2008 Sep 25;8:92. doi: 10.1186/1471-213X-8-92.

PMID:
18817563
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

The mouse genome database (MGD): new features facilitating a model system.

Eppig JT, Blake JA, Bult CJ, Kadin JA, Richardson JE; Mouse Genome Database Group.

Nucleic Acids Res. 2007 Jan;35(Database issue):D630-7. Epub 2006 Nov 29.

PMID:
17135206
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Gene Regulation Ontology (GRO): design principles and use cases.

Beisswanger E, Lee V, Kim JJ, Rebholz-Schuhmann D, Splendiani A, Dameron O, Schulz S, Hahn U.

Stud Health Technol Inform. 2008;136:9-14.

PMID:
18487700
[PubMed - indexed for MEDLINE]
20.

Disease Ontology: a backbone for disease semantic integration.

Schriml LM, Arze C, Nadendla S, Chang YW, Mazaitis M, Felix V, Feng G, Kibbe WA.

Nucleic Acids Res. 2012 Jan;40(Database issue):D940-6. doi: 10.1093/nar/gkr972. Epub 2011 Nov 12.

PMID:
22080554
[PubMed - indexed for MEDLINE]
Free PMC Article

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