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Results: 1 to 20 of 71

1.

Genomic analysis of early murine mammary gland development using novel probe-level algorithms.

Master SR, Stoddard AJ, Bailey LC, Pan TC, Dugan KD, Chodosh LA.

Genome Biol. 2005;6(2):R20. Epub 2005 Feb 1.

PMID:
15693949
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Identifying significant temporal variation in time course microarray data without replicates.

Billups SC, Neville MC, Rudolph M, Porter W, Schedin P.

BMC Bioinformatics. 2009 Mar 26;10:96. doi: 10.1186/1471-2105-10-96.

PMID:
19323838
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

A high performance test of differential gene expression for oligonucleotide arrays.

Lemon WJ, Liyanarachchi S, You M.

Genome Biol. 2003;4(10):R67. Epub 2003 Sep 10.

PMID:
14519202
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Identification of differentially expressed microRNAs during the development of Chinese murine mammary gland.

Wang C, Li Q.

J Genet Genomics. 2007 Nov;34(11):966-73.

PMID:
18037133
[PubMed - indexed for MEDLINE]
5.

Probe-level measurement error improves accuracy in detecting differential gene expression.

Liu X, Milo M, Lawrence ND, Rattray M.

Bioinformatics. 2006 Sep 1;22(17):2107-13. Epub 2006 Jul 4.

PMID:
16820429
[PubMed - indexed for MEDLINE]
Free Article
6.

Gene expression profiling of early involuting mammary gland reveals novel genes potentially relevant to human breast cancer.

Blanchard A, Shiu R, Booth S, Sorensen G, DeCorby N, Nistor A, Wong P, Leygue E, Myal Y.

Front Biosci. 2007 Jan 1;12:2221-32.

PMID:
17127459
[PubMed - indexed for MEDLINE]
7.

Computational expression deconvolution in a complex mammalian organ.

Wang M, Master SR, Chodosh LA.

BMC Bioinformatics. 2006 Jul 3;7:328.

PMID:
16817968
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

The effects of probe binding affinity differences on gene expression measurements and how to deal with them.

Dannemann M, Lorenc A, Hellmann I, Khaitovich P, Lachmann M.

Bioinformatics. 2009 Nov 1;25(21):2772-9. doi: 10.1093/bioinformatics/btp492. Epub 2009 Aug 18.

PMID:
19689957
[PubMed - indexed for MEDLINE]
Free Article
9.

Robust detection and genotyping of single feature polymorphisms from gene expression data.

Wang M, Hu X, Li G, Leach LJ, Potokina E, Druka A, Waugh R, Kearsey MJ, Luo Z.

PLoS Comput Biol. 2009 Mar;5(3):e1000317. doi: 10.1371/journal.pcbi.1000317. Epub 2009 Mar 13.

PMID:
19282978
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

[Preparation and analysis of oligonucleotide microarray for expression detection of mouse cytokine-associated gene].

Huang J, Chen SH, Tong L, Guan W, Ding Y, Liang H, Li WJ, Wang SQ.

Sheng Wu Gong Cheng Xue Bao. 2002 Jul;18(4):501-4. Chinese.

PMID:
12385252
[PubMed - indexed for MEDLINE]
11.

Identification of estrogen-responsive genes in the parenchyma and fat pad of the bovine mammary gland by microarray analysis.

Li RW, Meyer MJ, Van Tassell CP, Sonstegard TS, Connor EE, Van Amburgh ME, Boisclair YR, Capuco AV.

Physiol Genomics. 2006 Oct 3;27(1):42-53. Epub 2006 Jun 20.

PMID:
16788005
[PubMed - indexed for MEDLINE]
Free Article
12.

Comparison of seven methods for producing Affymetrix expression scores based on False Discovery Rates in disease profiling data.

Shedden K, Chen W, Kuick R, Ghosh D, Macdonald J, Cho KR, Giordano TJ, Gruber SB, Fearon ER, Taylor JM, Hanash S.

BMC Bioinformatics. 2005 Feb 10;6:26.

PMID:
15705192
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Genomic profiles and predictive biological networks in oxidant-induced atherogenesis.

Johnson CD, Balagurunathan Y, Lu KP, Tadesse M, Falahatpisheh MH, Carroll RJ, Dougherty ER, Afshari CA, Ramos KS.

Physiol Genomics. 2003 May 13;13(3):263-75.

PMID:
12657712
[PubMed - indexed for MEDLINE]
Free Article
14.

Effect of prenatal exposure to the endocrine disruptor bisphenol A on mammary gland morphology and gene expression signature.

Moral R, Wang R, Russo IH, Lamartiniere CA, Pereira J, Russo J.

J Endocrinol. 2008 Jan;196(1):101-12. doi: 10.1677/JOE-07-0056.

PMID:
18180321
[PubMed - indexed for MEDLINE]
Free Article
15.

Long versus short oligonucleotide microarrays for the study of gene expression in nonhuman primates.

Walker SJ, Wang Y, Grant KA, Chan F, Hellmann GM.

J Neurosci Methods. 2006 Apr 15;152(1-2):179-89. Epub 2005 Oct 25.

PMID:
16253343
[PubMed - indexed for MEDLINE]
16.

Amplification of the Gene Ontology annotation of Affymetrix probe sets.

Muro EM, Perez-Iratxeta C, Andrade-Navarro MA.

BMC Bioinformatics. 2006 Mar 20;7:159.

PMID:
16549014
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Empirical validation of the S-Score algorithm in the analysis of gene expression data.

Kennedy RE, Archer KJ, Miles MF.

BMC Bioinformatics. 2006 Mar 17;7:154.

PMID:
16545131
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

CGHScan: finding variable regions using high-density microarray comparative genomic hybridization data.

Anderson BD, Gilson MC, Scott AA, Biehl BS, Glasner JD, Rajashekara G, Splitter GA, Perna NT.

BMC Genomics. 2006 Apr 25;7:91.

PMID:
16638145
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Correlating measurements across samples improves accuracy of large-scale expression profile experiments.

Alvarez MJ, Sumazin P, Rajbhandari P, Califano A.

Genome Biol. 2009;10(12):R143. doi: 10.1186/gb-2009-10-12-r143. Epub 2009 Dec 30.

PMID:
20042104
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Probe rank approaches for gene selection in oligonucleotide arrays with a small number of replicates.

Chen DT, Chen JJ, Soong SJ.

Bioinformatics. 2005 Jun 15;21(12):2861-6. Epub 2005 Apr 6.

PMID:
15814562
[PubMed - indexed for MEDLINE]
Free Article

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