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Results: 1 to 20 of 85

1.

Using ontologies to describe mouse phenotypes.

Gkoutos GV, Green EC, Mallon AM, Hancock JM, Davidson D.

Genome Biol. 2005;6(1):R8. Epub 2004 Dec 20.

PMID:
15642100
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Searching the Mouse Genome Informatics (MGI) resources for information on mouse biology from genotype to phenotype.

Shaw DR.

Curr Protoc Bioinformatics. 2009 Mar;Chapter 1:Unit1.7. doi: 10.1002/0471250953.bi0107s25.

PMID:
19274630
[PubMed - indexed for MEDLINE]
3.

Building mouse phenotype ontologies.

Gkoutos GV, Green EC, Mallon AM, Hancock JM, Davidson D.

Pac Symp Biocomput. 2004:178-89.

PMID:
14992502
[PubMed - indexed for MEDLINE]
4.

Searching the Mouse Genome Informatics (MGI) resources for information on mouse biology from genotype to phenotype.

Shaw D.

Curr Protoc Bioinformatics. 2004 May;Chapter 1:Unit 1.7. doi: 10.1002/0471250953.bi0107s05.

PMID:
18428715
[PubMed - indexed for MEDLINE]
5.

The mouse genome database (MGD): new features facilitating a model system.

Eppig JT, Blake JA, Bult CJ, Kadin JA, Richardson JE; Mouse Genome Database Group.

Nucleic Acids Res. 2007 Jan;35(Database issue):D630-7. Epub 2006 Nov 29.

PMID:
17135206
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

The mammalian phenotype ontology: enabling robust annotation and comparative analysis.

Smith CL, Eppig JT.

Wiley Interdiscip Rev Syst Biol Med. 2009 Nov-Dec;1(3):390-9. doi: 10.1002/wsbm.44. Review.

PMID:
20052305
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Practical application of ontologies to annotate and analyse large scale raw mouse phenotype data.

Beck T, Morgan H, Blake A, Wells S, Hancock JM, Mallon AM.

BMC Bioinformatics. 2009 May 6;10 Suppl 5:S2. doi: 10.1186/1471-2105-10-S5-S2.

PMID:
19426459
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

PhenomeNET: a whole-phenome approach to disease gene discovery.

Hoehndorf R, Schofield PN, Gkoutos GV.

Nucleic Acids Res. 2011 Oct;39(18):e119. doi: 10.1093/nar/gkr538. Epub 2011 Jul 6.

PMID:
21737429
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Beyond the data deluge: data integration and bio-ontologies.

Blake JA, Bult CJ.

J Biomed Inform. 2006 Jun;39(3):314-20. Epub 2006 Feb 21.

PMID:
16564748
[PubMed - indexed for MEDLINE]
Free Article
10.

Using ontologies in PROTEUS for modeling proteomics data mining applications.

Cannataro M, Guzzi PH, Mazza T, Tradigo G, Veltri P.

Stud Health Technol Inform. 2005;112:17-26.

PMID:
15923712
[PubMed - indexed for MEDLINE]
11.

Representing default knowledge in biomedical ontologies: application to the integration of anatomy and phenotype ontologies.

Hoehndorf R, Loebe F, Kelso J, Herre H.

BMC Bioinformatics. 2007 Oct 9;8:377.

PMID:
17925014
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Biomedical word sense disambiguation with ontologies and metadata: automation meets accuracy.

Alexopoulou D, Andreopoulos B, Dietze H, Doms A, Gandon F, Hakenberg J, Khelif K, Schroeder M, W├Ąchter T.

BMC Bioinformatics. 2009 Jan 21;10:28. doi: 10.1186/1471-2105-10-28.

PMID:
19159460
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Understanding mammalian genetic systems: the challenge of phenotyping in the mouse.

Brown SD, Hancock JM, Gates H.

PLoS Genet. 2006 Aug 25;2(8):e118.

PMID:
16933996
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Mouse, man, and meaning: bridging the semantics of mouse phenotype and human disease.

Hancock JM, Mallon AM, Beck T, Gkoutos GV, Mungall C, Schofield PN.

Mamm Genome. 2009 Aug;20(8):457-61. doi: 10.1007/s00335-009-9208-3. Epub 2009 Aug 2.

PMID:
19649761
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

The Mammalian Phenotype Ontology as a tool for annotating, analyzing and comparing phenotypic information.

Smith CL, Goldsmith CA, Eppig JT.

Genome Biol. 2005;6(1):R7. Epub 2004 Dec 15.

PMID:
15642099
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Bioinformatics resources for behavior studies in the laboratory mouse.

Bult CJ.

Int Rev Neurobiol. 2012;104:71-90. doi: 10.1016/B978-0-12-398323-7.00004-5. Review.

PMID:
23195312
[PubMed - indexed for MEDLINE]
17.

The Mouse Genome Database (MGD): mouse biology and model systems.

Bult CJ, Eppig JT, Kadin JA, Richardson JE, Blake JA; Mouse Genome Database Group.

Nucleic Acids Res. 2008 Jan;36(Database issue):D724-8. Epub 2007 Dec 23.

PMID:
18158299
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Controlled vocabularies for microbial virulence factors.

Korves T, Colosimo ME.

Trends Microbiol. 2009 Jul;17(7):279-85. doi: 10.1016/j.tim.2009.04.002. Epub 2009 Jul 2. Review.

PMID:
19577471
[PubMed - indexed for MEDLINE]
19.

Integration of text- and data-mining using ontologies successfully selects disease gene candidates.

Tiffin N, Kelso JF, Powell AR, Pan H, Bajic VB, Hide WA.

Nucleic Acids Res. 2005 Mar 14;33(5):1544-52. Print 2005.

PMID:
15767279
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Integrating phenotype ontologies across multiple species.

Mungall CJ, Gkoutos GV, Smith CL, Haendel MA, Lewis SE, Ashburner M.

Genome Biol. 2010 Jan 8;11(1):R2. doi: 10.1186/gb-2010-11-1-r2.

PMID:
20064205
[PubMed - indexed for MEDLINE]
Free PMC Article

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