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Results: 1 to 20 of 69

1.

GOToolBox: functional analysis of gene datasets based on Gene Ontology.

Martin D, Brun C, Remy E, Mouren P, Thieffry D, Jacq B.

Genome Biol. 2004;5(12):R101. Epub 2004 Nov 26.

PMID:
15575967
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

GObar: a gene ontology based analysis and visualization tool for gene sets.

Lee JS, Katari G, Sachidanandam R.

BMC Bioinformatics. 2005 Jul 25;6:189.

PMID:
16042800
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

AgBase: a unified resource for functional analysis in agriculture.

McCarthy FM, Bridges SM, Wang N, Magee GB, Williams WP, Luthe DS, Burgess SC.

Nucleic Acids Res. 2007 Jan;35(Database issue):D599-603. Epub 2006 Nov 29.

PMID:
17135208
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

GS2: an efficiently computable measure of GO-based similarity of gene sets.

Ruths T, Ruths D, Nakhleh L.

Bioinformatics. 2009 May 1;25(9):1178-84. doi: 10.1093/bioinformatics/btp128. Epub 2009 Mar 16.

PMID:
19289444
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

DynGO: a tool for visualizing and mining of Gene Ontology and its associations.

Liu H, Hu ZZ, Wu CH.

BMC Bioinformatics. 2005 Aug 9;6:201.

PMID:
16091147
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

GOLEM: an interactive graph-based gene-ontology navigation and analysis tool.

Sealfon RS, Hibbs MA, Huttenhower C, Myers CL, Troyanskaya OG.

BMC Bioinformatics. 2006 Oct 10;7:443.

PMID:
17032457
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

GeneTools--application for functional annotation and statistical hypothesis testing.

Beisvag V, Jünge FK, Bergum H, Jølsum L, Lydersen S, Günther CC, Ramampiaro H, Langaas M, Sandvik AK, Laegreid A.

BMC Bioinformatics. 2006 Oct 24;7:470.

PMID:
17062145
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

PlasmoDraft: a database of Plasmodium falciparum gene function predictions based on postgenomic data.

Bréhélin L, Dufayard JF, Gascuel O.

BMC Bioinformatics. 2008 Oct 16;9:440. doi: 10.1186/1471-2105-9-440.

PMID:
18925948
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

GOing from functional genomics to biological significance.

McCarthy FM, Bridges SM, Burgess SC.

Cytogenet Genome Res. 2007;117(1-4):278-87.

PMID:
17675869
[PubMed - indexed for MEDLINE]
10.

Gene Class expression: analysis tool of Gene Ontology terms with gene expression data.

Pereira GS, Brandão RM, Giuliatti S, Zago MA, Silva WA Jr.

Genet Mol Res. 2006 Mar 31;5(1):108-14.

PMID:
16755502
[PubMed - indexed for MEDLINE]
Free Article
11.

Gene Ontology analysis in multiple gene clusters under multiple hypothesis testing framework.

Zhong S, Xie D.

Artif Intell Med. 2007 Oct;41(2):105-15.

PMID:
17913480
[PubMed - indexed for MEDLINE]
12.

A procedure for assessing GO annotation consistency.

Dolan ME, Ni L, Camon E, Blake JA.

Bioinformatics. 2005 Jun;21 Suppl 1:i136-43.

PMID:
15961450
[PubMed - indexed for MEDLINE]
Free Article
13.

MILANO--custom annotation of microarray results using automatic literature searches.

Rubinstein R, Simon I.

BMC Bioinformatics. 2005 Jan 20;6:12.

PMID:
15661078
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

MitoRes: a resource of nuclear-encoded mitochondrial genes and their products in Metazoa.

Catalano D, Licciulli F, Turi A, Grillo G, Saccone C, D'Elia D.

BMC Bioinformatics. 2006 Jan 24;7:36.

PMID:
16433928
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

AmiGO: online access to ontology and annotation data.

Carbon S, Ireland A, Mungall CJ, Shu S, Marshall B, Lewis S; AmiGO Hub; Web Presence Working Group.

Bioinformatics. 2009 Jan 15;25(2):288-9. doi: 10.1093/bioinformatics/btn615. Epub 2008 Nov 25.

PMID:
19033274
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

YOGY: a web-based, integrated database to retrieve protein orthologs and associated Gene Ontology terms.

Penkett CJ, Morris JA, Wood V, Bähler J.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W330-4.

PMID:
16845020
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

APID: Agile Protein Interaction DataAnalyzer.

Prieto C, De Las Rivas J.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W298-302.

PMID:
16845013
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

FlyPhy: a phylogenomic analysis platform for Drosophila genes and gene families.

Wu J, Xu X, Xiao J, Xu L, Yi H, Gao S, Liu J, Bao Q, Zhao F, Li X.

BMC Bioinformatics. 2009 Apr 25;10:123. doi: 10.1186/1471-2105-10-123.

PMID:
19393099
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

GOurmet: a tool for quantitative comparison and visualization of gene expression profiles based on gene ontology (GO) distributions.

Doherty JM, Carmichael LK, Mills JC.

BMC Bioinformatics. 2006 Mar 17;7:151.

PMID:
16545118
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Ontological visualization of protein-protein interactions.

Drabkin HJ, Hollenbeck C, Hill DP, Blake JA.

BMC Bioinformatics. 2005 Feb 11;6:29.

PMID:
15707487
[PubMed - indexed for MEDLINE]
Free PMC Article

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