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Results: 1 to 20 of 83

1.

Estimating genomic coexpression networks using first-order conditional independence.

Magwene PM, Kim J.

Genome Biol. 2004;5(12):R100. Epub 2004 Nov 30.

PMID:
15575966
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Using Bayesian networks to analyze expression data.

Friedman N, Linial M, Nachman I, Pe'er D.

J Comput Biol. 2000;7(3-4):601-20.

PMID:
11108481
[PubMed - indexed for MEDLINE]
3.

Using protein-protein interactions for refining gene networks estimated from microarray data by Bayesian networks.

Nariai N, Kim S, Imoto S, Miyano S.

Pac Symp Biocomput. 2004:336-47.

PMID:
14992515
[PubMed - indexed for MEDLINE]
4.

Using graphical models and genomic expression data to statistically validate models of genetic regulatory networks.

Hartemink AJ, Gifford DK, Jaakkola TS, Young RA.

Pac Symp Biocomput. 2001:422-33.

PMID:
11262961
[PubMed - indexed for MEDLINE]
5.

Use of gene networks for identifying and validating drug targets.

Imoto S, Savoie CJ, Aburatani S, Kim S, Tashiro K, Kuhara S, Miyano S.

J Bioinform Comput Biol. 2003 Oct;1(3):459-74.

PMID:
15290765
[PubMed - indexed for MEDLINE]
6.

Extraction of correlated gene clusters by multiple graph comparison.

Nakaya A, Goto S, Kanehisa M.

Genome Inform. 2001;12:44-53.

PMID:
11791223
[PubMed - indexed for MEDLINE]
7.

Bayesian network and nonparametric heteroscedastic regression for nonlinear modeling of genetic network.

Imoto S, Kim S, Goto T, Miyano S, Aburatani S, Tashiro K, Kuhara S.

J Bioinform Comput Biol. 2003 Jul;1(2):231-52.

PMID:
15290771
[PubMed - indexed for MEDLINE]
8.

Clustering of diverse genomic data using information fusion.

Kasturi J, Acharya R.

Bioinformatics. 2005 Feb 15;21(4):423-9. Epub 2004 Dec 17.

PMID:
15608052
[PubMed - indexed for MEDLINE]
Free Article
9.

Inference of gene pathways using mixture Bayesian networks.

Ko Y, Zhai C, Rodriguez-Zas S.

BMC Syst Biol. 2009 May 19;3:54. doi: 10.1186/1752-0509-3-54.

PMID:
19454027
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Study of coordinative gene expression at the biological process level.

Yu T, Sun W, Yuan S, Li KC.

Bioinformatics. 2005 Sep 15;21(18):3651-7. Epub 2005 Aug 2.

PMID:
16076891
[PubMed - indexed for MEDLINE]
Free Article
11.

Decomposing gene expression into cellular processes.

Segal E, Battle A, Koller D.

Pac Symp Biocomput. 2003:89-100.

PMID:
12603020
[PubMed - indexed for MEDLINE]
12.

Reconstructing genetic networks from time ordered gene expression data using Bayesian method with global search algorithm.

Wang SC.

J Bioinform Comput Biol. 2004 Sep;2(3):441-58.

PMID:
15359420
[PubMed - indexed for MEDLINE]
13.

Application of Bayesian decomposition for analysing microarray data.

Moloshok TD, Klevecz RR, Grant JD, Manion FJ, Speier WF 4th, Ochs MF.

Bioinformatics. 2002 Apr;18(4):566-75.

PMID:
12016054
[PubMed - indexed for MEDLINE]
Free Article
14.

Quantitative inference of dynamic regulatory pathways via microarray data.

Chang WC, Li CW, Chen BS.

BMC Bioinformatics. 2005 Mar 7;6:44.

PMID:
15748298
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

New components of the Dictyostelium PKA pathway revealed by Bayesian analysis of expression data.

Parikh A, Huang E, Dinh C, Zupan B, Kuspa A, Subramanian D, Shaulsky G.

BMC Bioinformatics. 2010 Mar 31;11:163. doi: 10.1186/1471-2105-11-163.

PMID:
20356373
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Inferring gene networks from time series microarray data using dynamic Bayesian networks.

Kim SY, Imoto S, Miyano S.

Brief Bioinform. 2003 Sep;4(3):228-35.

PMID:
14582517
[PubMed - indexed for MEDLINE]
Free Article
17.

Modelling gene functional linkages using yeast microarray data.

Wang T, Xue G, Touchman JW.

Int J Bioinform Res Appl. 2007;3(2):170-86.

PMID:
18048187
[PubMed - indexed for MEDLINE]
18.

Scalable learning of large networks.

Roy S, Plis S, Werner-Washburne M, Lane T.

IET Syst Biol. 2009 Sep;3(5):404-13. doi: 10.1049/iet-syb.2008.0161.

PMID:
21028930
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

An empirical Bayes approach to inferring large-scale gene association networks.

Schäfer J, Strimmer K.

Bioinformatics. 2005 Mar;21(6):754-64. Epub 2004 Oct 12.

PMID:
15479708
[PubMed - indexed for MEDLINE]
Free Article
20.

Dynamic Bayesian network and nonparametric regression for nonlinear modeling of gene networks from time series gene expression data.

Kim S, Imoto S, Miyano S.

Biosystems. 2004 Jul;75(1-3):57-65.

PMID:
15245804
[PubMed - indexed for MEDLINE]

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