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Results: 1 to 20 of 73

1.

Sparse graphical Gaussian modeling of the isoprenoid gene network in Arabidopsis thaliana.

Wille A, Zimmermann P, Vranová E, Fürholz A, Laule O, Bleuler S, Hennig L, Prelic A, von Rohr P, Thiele L, Zitzler E, Gruissem W, Bühlmann P.

Genome Biol. 2004;5(11):R92. Epub 2004 Oct 25.

PMID:
15535868
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Learning an L1-regularized Gaussian Bayesian network in the equivalence class space.

Vidaurre D, Bielza C, Larrañaga P.

IEEE Trans Syst Man Cybern B Cybern. 2010 Oct;40(5):1231-42. doi: 10.1109/TSMCB.2009.2036593. Epub 2010 Jan 15.

PMID:
20083459
[PubMed - indexed for MEDLINE]
3.

Gradient directed regularization for sparse Gaussian concentration graphs, with applications to inference of genetic networks.

Li H, Gui J.

Biostatistics. 2006 Apr;7(2):302-17. Epub 2005 Dec 2.

PMID:
16326758
[PubMed - indexed for MEDLINE]
Free Article
4.

AtIPD: a curated database of Arabidopsis isoprenoid pathway models and genes for isoprenoid network analysis.

Vranová E, Hirsch-Hoffmann M, Gruissem W.

Plant Physiol. 2011 Aug;156(4):1655-60. doi: 10.1104/pp.111.177758. Epub 2011 May 26. No abstract available.

PMID:
21617028
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Quantitative inference of dynamic regulatory pathways via microarray data.

Chang WC, Li CW, Chen BS.

BMC Bioinformatics. 2005 Mar 7;6:44.

PMID:
15748298
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Genome organization in Arabidopsis thaliana: a survey for genes involved in isoprenoid and chlorophyll metabolism.

Lange BM, Ghassemian M.

Plant Mol Biol. 2003 Apr;51(6):925-48.

PMID:
12777052
[PubMed - indexed for MEDLINE]
7.

Weighted lasso in graphical Gaussian modeling for large gene network estimation based on microarray data.

Shimamura T, Imoto S, Yamaguchi R, Miyano S.

Genome Inform. 2007;19:142-53.

PMID:
18546512
[PubMed - indexed for MEDLINE]
8.

A comparative study of covariance selection models for the inference of gene regulatory networks.

Stifanelli PF, Creanza TM, Anglani R, Liuzzi VC, Mukherjee S, Schena FP, Ancona N.

J Biomed Inform. 2013 Oct;46(5):894-904. doi: 10.1016/j.jbi.2013.07.002. Epub 2013 Jul 20.

PMID:
23876513
[PubMed - indexed for MEDLINE]
Free Article
9.

An Arabidopsis gene network based on the graphical Gaussian model.

Ma S, Gong Q, Bohnert HJ.

Genome Res. 2007 Nov;17(11):1614-25. Epub 2007 Oct 5.

PMID:
17921353
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

A yeast synthetic network for in vivo assessment of reverse-engineering and modeling approaches.

Cantone I, Marucci L, Iorio F, Ricci MA, Belcastro V, Bansal M, Santini S, di Bernardo M, di Bernardo D, Cosma MP.

Cell. 2009 Apr 3;137(1):172-81. doi: 10.1016/j.cell.2009.01.055. Epub 2009 Mar 26.

PMID:
19327819
[PubMed - indexed for MEDLINE]
Free Article
11.

AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors.

Davuluri RV, Sun H, Palaniswamy SK, Matthews N, Molina C, Kurtz M, Grotewold E.

BMC Bioinformatics. 2003 Jun 23;4:25. Epub 2003 Jun 23.

PMID:
12820902
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Analysis of gene sets based on the underlying regulatory network.

Shojaie A, Michailidis G.

J Comput Biol. 2009 Mar;16(3):407-26. doi: 10.1089/cmb.2008.0081.

PMID:
19254181
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Dynamics of the genetic regulatory network for Arabidopsis thaliana flower morphogenesis.

Mendoza L, Alvarez-Buylla ER.

J Theor Biol. 1998 Jul 27;193(2):307-19.

PMID:
9714934
[PubMed - indexed for MEDLINE]
14.

An account of cloned genes of Methyl-erythritol-4-phosphate pathway of isoprenoid biosynthesis in plants.

Ganjewala D, Kumar S, Luthra R.

Curr Issues Mol Biol. 2009;11 Suppl 1:i35-45. Epub 2009 Feb 2. Review.

PMID:
19193963
[PubMed - indexed for MEDLINE]
Free Article
15.

Involvement of NRAMP1 from Arabidopsis thaliana in iron transport.

Curie C, Alonso JM, Le Jean M, Ecker JR, Briat JF.

Biochem J. 2000 May 1;347 Pt 3:749-55.

PMID:
10769179
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

The low-temperature- and salt-induced RCI2A gene of Arabidopsis complements the sodium sensitivity caused by a deletion of the homologous yeast gene SNA1.

Nylander M, Heino P, Helenius E, Palva ET, Ronne H, Welin BV.

Plant Mol Biol. 2001 Feb;45(3):341-52.

PMID:
11292079
[PubMed - indexed for MEDLINE]
17.

Robust Gaussian graphical modeling via l1 penalization.

Sun H, Li H.

Biometrics. 2012 Dec;68(4):1197-206. doi: 10.1111/j.1541-0420.2012.01785.x. Epub 2012 Sep 28.

PMID:
23020775
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

A steady-state modeling approach to validate an in vivo mechanism of the GAL regulatory network in Saccharomyces cerevisiae.

Verma M, Bhat PJ, Bhartiya S, Venkatesh KV.

Eur J Biochem. 2004 Oct;271(20):4064-74.

PMID:
15479235
[PubMed - indexed for MEDLINE]
Free Article
19.

Comparative evaluation of reverse engineering gene regulatory networks with relevance networks, graphical gaussian models and bayesian networks.

Werhli AV, Grzegorczyk M, Husmeier D.

Bioinformatics. 2006 Oct 15;22(20):2523-31. Epub 2006 Jul 14.

PMID:
16844710
[PubMed - indexed for MEDLINE]
Free Article
20.

Structure and dynamics of the isoprenoid pathway network.

Vranová E, Coman D, Gruissem W.

Mol Plant. 2012 Mar;5(2):318-33. doi: 10.1093/mp/sss015. Review.

PMID:
22442388
[PubMed - indexed for MEDLINE]

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