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Results: 1 to 20 of 195

1.

Insertion bias and purifying selection of retrotransposons in the Arabidopsis thaliana genome.

Pereira V.

Genome Biol. 2004;5(10):R79. Epub 2004 Sep 29.

PMID:
15461797
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Genomic neighborhoods for Arabidopsis retrotransposons: a role for targeted integration in the distribution of the Metaviridae.

Peterson-Burch BD, Nettleton D, Voytas DF.

Genome Biol. 2004;5(10):R78. Epub 2004 Sep 29.

PMID:
15461796
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Evolutionary history of Oryza sativa LTR retrotransposons: a preliminary survey of the rice genome sequences.

Gao L, McCarthy EM, Ganko EW, McDonald JF.

BMC Genomics. 2004 Mar 2;5(1):18.

PMID:
15040813
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Bursts of retrotransposition reproduced in Arabidopsis.

Tsukahara S, Kobayashi A, Kawabe A, Mathieu O, Miura A, Kakutani T.

Nature. 2009 Sep 17;461(7262):423-6. doi: 10.1038/nature08351. Epub 2009 Sep 6.

PMID:
19734880
[PubMed - indexed for MEDLINE]
5.

The genomic organization of retrotransposons in Brassica oleracea.

Alix K, Ryder CD, Moore J, King GJ, Pat Heslop-Harrison JS.

Plant Mol Biol. 2005 Dec;59(6):839-51.

PMID:
16307361
[PubMed - indexed for MEDLINE]
6.

Retrotranspositions in orthologous regions of closely related grass species.

Du C, Swigonová Z, Messing J.

BMC Evol Biol. 2006 Aug 16;6:62.

PMID:
16914031
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Exceptional diversity, non-random distribution, and rapid evolution of retroelements in the B73 maize genome.

Baucom RS, Estill JC, Chaparro C, Upshaw N, Jogi A, Deragon JM, Westerman RP, Sanmiguel PJ, Bennetzen JL.

PLoS Genet. 2009 Nov;5(11):e1000732. doi: 10.1371/journal.pgen.1000732. Epub 2009 Nov 20.

PMID:
19936065
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Multiple non-LTR retrotransposons in the genome of Arabidopsis thaliana.

Wright DA, Ke N, Smalle J, Hauge BM, Goodman HM, Voytas DF.

Genetics. 1996 Feb;142(2):569-78.

PMID:
8852854
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Genome-wide characterization of long terminal repeat -retrotransposons in apple reveals the differences in heterogeneity and copy number between Ty1-copia and Ty3-gypsy retrotransposons.

Sun HY, Dai HY, Zhao GL, Ma Y, Ou CQ, Li H, Li LG, Zhang ZH.

J Integr Plant Biol. 2008 Sep;50(9):1130-9. doi: 10.1111/j.1744-7909.2008.00717.x.

PMID:
18844781
[PubMed - indexed for MEDLINE]
10.

Structural and evolutionary analyses of the Ty3/gypsy group of LTR retrotransposons in the genome of Anopheles gambiae.

TubĂ­o JM, Naveira H, Costas J.

Mol Biol Evol. 2005 Jan;22(1):29-39. Epub 2004 Sep 8.

PMID:
15356275
[PubMed - indexed for MEDLINE]
Free Article
11.
12.

Natural selection on gene function drives the evolution of LTR retrotransposon families in the rice genome.

Baucom RS, Estill JC, Leebens-Mack J, Bennetzen JL.

Genome Res. 2009 Feb;19(2):243-54. doi: 10.1101/gr.083360.108. Epub 2008 Nov 24.

PMID:
19029538
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Local definition of Ty1 target preference by long terminal repeats and clustered tRNA genes.

Bachman N, Eby Y, Boeke JD.

Genome Res. 2004 Jul;14(7):1232-47. Epub 2004 Jun 14.

PMID:
15197163
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Mechanisms regulating the copy numbers of six LTR retrotransposons in the genome of Drosophila melanogaster.

Carr M, Soloway JR, Robinson TE, Brookfield JF.

Chromosoma. 2002 Feb;110(8):511-8.

PMID:
12068968
[PubMed - indexed for MEDLINE]
15.

Evolution of Tom, 297, 17.6 and rover retrotransposons in Drosophilidae species.

Vidal NM, Ludwig A, Loreto EL.

Mol Genet Genomics. 2009 Oct;282(4):351-62. doi: 10.1007/s00438-009-0468-0. Epub 2009 Jul 8.

PMID:
19585148
[PubMed - indexed for MEDLINE]
16.

Interactions among genomic structure, function, and evolution revealed by comprehensive analysis of the Arabidopsis thaliana genome.

Wu C, Wang S, Zhang HB.

Genomics. 2006 Oct;88(4):394-406. Epub 2006 Jun 27.

PMID:
16806804
[PubMed - indexed for MEDLINE]
Free Article
17.

Evolutionary dynamics of the Ty3/gypsy LTR retrotransposons in the genome of Anopheles gambiae.

Tubio JM, Tojo M, Bassaganyas L, Escaramis G, Sharakhov IV, Sharakhova MV, Tornador C, Unger MF, Naveira H, Costas J, Besansky NJ.

PLoS One. 2011 Jan 24;6(1):e16328. doi: 10.1371/journal.pone.0016328.

PMID:
21283637
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Genome-wide characterization of nonreference transposons reveals evolutionary propensities of transposons in soybean.

Tian Z, Zhao M, She M, Du J, Cannon SB, Liu X, Xu X, Qi X, Li MW, Lam HM, Ma J.

Plant Cell. 2012 Nov;24(11):4422-36. doi: 10.1105/tpc.112.103630. Epub 2012 Nov 21.

PMID:
23175746
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Long terminal repeat retrotransposons of Oryza sativa.

McCarthy EM, Liu J, Lizhi G, McDonald JF.

Genome Biol. 2002 Sep 13;3(10):RESEARCH0053. Epub 2002 Sep 13.

PMID:
12372141
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Non-LTR retrotransposons in fungi.

Novikova O, Fet V, Blinov A.

Funct Integr Genomics. 2009 Feb;9(1):27-42. doi: 10.1007/s10142-008-0093-8. Epub 2008 Aug 2.

PMID:
18677522
[PubMed - indexed for MEDLINE]

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