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Results: 1 to 20 of 78

1.

Clustering analysis of SAGE data using a Poisson approach.

Cai L, Huang H, Blackshaw S, Liu JS, Cepko C, Wong WH.

Genome Biol. 2004;5(7):R51. Epub 2004 Jun 29.

PMID:
15239836
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Clustering analysis of SAGE transcription profiles using a Poisson approach.

Huang H, Cai L, Wong WH.

Methods Mol Biol. 2008;387:185-98.

PMID:
18287632
[PubMed - indexed for MEDLINE]
3.

A Poisson-based adaptive affinity propagation clustering for SAGE data.

Tang D, Zhu Q, Yang F.

Comput Biol Chem. 2010 Feb;34(1):63-70. doi: 10.1016/j.compbiolchem.2009.11.001. Epub 2009 Dec 29.

PMID:
20042369
[PubMed - indexed for MEDLINE]
4.

Poisson-based self-organizing feature maps and hierarchical clustering for serial analysis of gene expression data.

Wang H, Zheng H, Azuaje F.

IEEE/ACM Trans Comput Biol Bioinform. 2007 Apr-Jun;4(2):163-75.

PMID:
17473311
[PubMed - indexed for MEDLINE]
5.

Improving pattern discovery and visualization of SAGE data through poisson-based self-adaptive neural networks.

Zheng H, Wang H, Azuaje F.

IEEE Trans Inf Technol Biomed. 2008 Jul;12(4):459-69. doi: 10.1109/TITB.2007.901208.

PMID:
18632326
[PubMed - indexed for MEDLINE]
6.

A seriation approach for visualization-driven discovery of co-expression patterns in Serial Analysis of Gene Expression (SAGE) data.

Morozova O, Morozov V, Hoffman BG, Helgason CD, Marra MA.

PLoS One. 2008 Sep 12;3(9):e3205. doi: 10.1371/journal.pone.0003205.

PMID:
18787709
[PubMed - indexed for MEDLINE]
Free PMC Article
7.
8.

Serial analysis of gene expression (SAGE): experimental method and data analysis.

Blackshaw S, St Croix B, Polyak K, Kim JB, Cai L.

Curr Protoc Hum Genet. 2007 Apr;Chapter 11:Unit 11.7. doi: 10.1002/0471142905.hg1107s53.

PMID:
18428405
[PubMed - indexed for MEDLINE]
9.

Simultaneous clustering of gene expression data with clinical chemistry and pathological evaluations reveals phenotypic prototypes.

Bushel PR, Wolfinger RD, Gibson G.

BMC Syst Biol. 2007 Feb 23;1:15.

PMID:
17408499
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Understanding SAGE data.

Wang SM.

Trends Genet. 2007 Jan;23(1):42-50. Epub 2006 Nov 15. Review.

PMID:
17109989
[PubMed - indexed for MEDLINE]
11.

Bayesian shrinkage estimation of the relative abundance of mRNA transcripts using SAGE.

Morris JS, Baggerly KA, Coombes KR.

Biometrics. 2003 Sep;59(3):476-86.

PMID:
14601748
[PubMed - indexed for MEDLINE]
12.

Modeling Sage data with a truncated gamma-Poisson model.

Thygesen HH, Zwinderman AH.

BMC Bioinformatics. 2006 Mar 20;7:157.

PMID:
16549008
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Cluster-based network model for time-course gene expression data.

Inoue LY, Neira M, Nelson C, Gleave M, Etzioni R.

Biostatistics. 2007 Jul;8(3):507-25. Epub 2006 Sep 15.

PMID:
16980695
[PubMed - indexed for MEDLINE]
Free Article
14.

Statistical comparison of two or more SAGE libraries: one tag at a time.

Schaaf GJ, van Ruissen F, van Kampen A, Kool M, Ruijter JM.

Methods Mol Biol. 2008;387:151-68.

PMID:
18287630
[PubMed - indexed for MEDLINE]
15.

A multi-stage approach to clustering and imputation of gene expression profiles.

Wong DS, Wong FK, Wood GR.

Bioinformatics. 2007 Apr 15;23(8):998-1005. Epub 2007 Feb 18.

PMID:
17308340
[PubMed - indexed for MEDLINE]
Free Article
16.

Statistical modeling of sequencing errors in SAGE libraries.

Beissbarth T, Hyde L, Smyth GK, Job C, Boon WM, Tan SS, Scott HS, Speed TP.

Bioinformatics. 2004 Aug 4;20 Suppl 1:i31-9.

PMID:
15262778
[PubMed - indexed for MEDLINE]
Free Article
17.

An algorithm to infer similarity among cell types and organisms by examining the most expressed sequences.

Pinto SA, Ortega JM.

Genet Mol Res. 2008 Sep 30;7(3):933-47.

PMID:
18949711
[PubMed - indexed for MEDLINE]
Free Article
18.

Distance-based clustering of CGH data.

Liu J, Mohammed J, Carter J, Ranka S, Kahveci T, Baudis M.

Bioinformatics. 2006 Aug 15;22(16):1971-8. Epub 2006 May 16.

PMID:
16705014
[PubMed - indexed for MEDLINE]
Free Article
19.

Modeling and analysis of multi-library, multi-group SAGE data with application to a study of mouse cerebellum.

Wang Z, Lin S, Popesco M, Rotter A.

Biometrics. 2007 Sep;63(3):777-86.

PMID:
17825009
[PubMed - indexed for MEDLINE]
20.

Statistical evaluation of SAGE libraries: consequences for experimental design.

Ruijter JM, Van Kampen AH, Baas F.

Physiol Genomics. 2002 Oct 29;11(2):37-44. Review.

PMID:
12407185
[PubMed - indexed for MEDLINE]

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