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Results: 1 to 20 of 161

1.

Comparative genomics of gene-family size in closely related bacteria.

Pushker R, Mira A, Rodríguez-Valera F.

Genome Biol. 2004;5(4):R27. Epub 2004 Mar 18.

PMID:
15059260
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Duplication is more common among laterally transferred genes than among indigenous genes.

Hooper SD, Berg OG.

Genome Biol. 2003;4(8):R48. Epub 2003 Jul 11.

PMID:
12914657
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

RECOMBFLOW: a scientific workflow environment for Intragenomic Gene Conversion analysis in bacterial genomes, including the pathogen Streptococcus pyogenes.

Alhiyafi J, Sabesan C, Lu S, Ram JL.

Int J Bioinform Res Appl. 2009;5(1):1-19.

PMID:
19136361
[PubMed - indexed for MEDLINE]
4.
5.

Phylogenetics and the cohesion of bacterial genomes.

Daubin V, Moran NA, Ochman H.

Science. 2003 Aug 8;301(5634):829-32.

PMID:
12907801
[PubMed - indexed for MEDLINE]
Free Article
6.

Ectopic gene conversions in bacterial genomes.

Morris RT, Drouin G.

Genome. 2007 Nov;50(11):975-84.

PMID:
18059543
[PubMed - indexed for MEDLINE]
7.

Physiological genomics of Escherichia coli protein families.

Liang P, Labedan B, Riley M.

Physiol Genomics. 2002;9(1):15-26.

PMID:
11948287
[PubMed - indexed for MEDLINE]
Free Article
8.

Diversification of Escherichia coli genomes: are bacteriophages the major contributors?

Ohnishi M, Kurokawa K, Hayashi T.

Trends Microbiol. 2001 Oct;9(10):481-5.

PMID:
11597449
[PubMed - indexed for MEDLINE]
9.

Global extent of horizontal gene transfer.

Choi IG, Kim SH.

Proc Natl Acad Sci U S A. 2007 Mar 13;104(11):4489-94. Epub 2007 Mar 7.

PMID:
17360551
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Estimating the extent of horizontal gene transfer in metagenomic sequences.

Tamames J, Moya A.

BMC Genomics. 2008 Mar 24;9:136. doi: 10.1186/1471-2164-9-136.

PMID:
18366724
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

[Methods for the identification of horizontal gene transfer (HGT) events and progress in related fields].

Li ZJ, Li HQ, Diao XM.

Yi Chuan. 2008 Sep;30(9):1108-14. Review. Chinese.

PMID:
18779166
[PubMed - indexed for MEDLINE]
12.

Evolution of a microbial nitrilase gene family: a comparative and environmental genomics study.

Podar M, Eads JR, Richardson TH.

BMC Evol Biol. 2005 Aug 6;5:42.

PMID:
16083508
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm.

Podell S, Gaasterland T, Allen EE.

BMC Bioinformatics. 2008 Oct 7;9:419. doi: 10.1186/1471-2105-9-419.

PMID:
18840280
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Origin and evolution of gene families in Bacteria and Archaea.

Collins RE, Merz H, Higgs PG.

BMC Bioinformatics. 2011 Oct 5;12 Suppl 9:S14. doi: 10.1186/1471-2105-12-S9-S14.

PMID:
22151831
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

A computational tool for the genomic identification of regions of unusual compositional properties and its utilization in the detection of horizontally transferred sequences.

Putonti C, Luo Y, Katili C, Chumakov S, Fox GE, Graur D, Fofanov Y.

Mol Biol Evol. 2006 Oct;23(10):1863-8. Epub 2006 Jul 7.

PMID:
16829541
[PubMed - indexed for MEDLINE]
Free Article
16.

[Genome analysis of pathogenic bacteria].

Hayashi H.

Tanpakushitsu Kakusan Koso. 2001 Dec;46(16 Suppl):2400-6. Review. Japanese. No abstract available.

PMID:
11802401
[PubMed - indexed for MEDLINE]
17.

Shedding genomic ballast: extensive parallel loss of ancestral gene families in animals.

Hughes AL, Friedman R.

J Mol Evol. 2004 Dec;59(6):827-33.

PMID:
15599514
[PubMed - indexed for MEDLINE]
18.

Genomic functional annotation using co-evolution profiles of gene clusters.

Zheng Y, Roberts RJ, Kasif S.

Genome Biol. 2002 Oct 10;3(11):RESEARCH0060. Epub 2002 Oct 10.

PMID:
12429059
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Modelling the evolution of multi-gene families.

Nye TM.

Stat Methods Med Res. 2009 Oct;18(5):487-504. doi: 10.1177/0962280208099450. Epub 2009 Jan 19.

PMID:
19153166
[PubMed - indexed for MEDLINE]
20.

Unraveling the evolutionary history of the phosphoryl-transfer chain of the phosphoenolpyruvate:phosphotransferase system through phylogenetic analyses and genome context.

Comas I, González-Candelas F, Zúñiga M.

BMC Evol Biol. 2008 May 16;8:147. doi: 10.1186/1471-2148-8-147.

PMID:
18485189
[PubMed - indexed for MEDLINE]
Free PMC Article

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