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Results: 1 to 20 of 179

1.

The regulatory content of intergenic DNA shapes genome architecture.

Nelson CE, Hersh BM, Carroll SB.

Genome Biol. 2004;5(4):R25. Epub 2004 Mar 15.

PMID:
15059258
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Genome-scale identification of Caenorhabditis elegans regulatory elements by tiling-array mapping of DNase I hypersensitive sites.

Shi B, Guo X, Wu T, Sheng S, Wang J, Skogerbø G, Zhu X, Chen R.

BMC Genomics. 2009 Feb 25;10:92. doi: 10.1186/1471-2164-10-92.

PMID:
19243610
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Analysis of conserved noncoding DNA in Drosophila reveals similar constraints in intergenic and intronic sequences.

Bergman CM, Kreitman M.

Genome Res. 2001 Aug;11(8):1335-45.

PMID:
11483574
[PubMed - indexed for MEDLINE]
Free Article
4.

Comparison of complete nuclear receptor sets from the human, Caenorhabditis elegans and Drosophila genomes.

Maglich JM, Sluder A, Guan X, Shi Y, McKee DD, Carrick K, Kamdar K, Willson TM, Moore JT.

Genome Biol. 2001;2(8):RESEARCH0029. Epub 2001 Jul 24.

PMID:
11532213
[PubMed - indexed for MEDLINE]
Free PMC Article
5.
6.

Genomic characterization of a repetitive motif strongly associated with developmental genes in Drosophila.

Costas J, Vieira CP, Casares F, Vieira J.

BMC Genomics. 2003 Dec 16;4(1):52.

PMID:
14675495
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Genomic regulatory blocks underlie extensive microsynteny conservation in insects.

Engström PG, Ho Sui SJ, Drivenes O, Becker TS, Lenhard B.

Genome Res. 2007 Dec;17(12):1898-908. Epub 2007 Nov 7.

PMID:
17989259
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Novel genes derived from noncoding DNA in Drosophila melanogaster are frequently X-linked and exhibit testis-biased expression.

Levine MT, Jones CD, Kern AD, Lindfors HA, Begun DJ.

Proc Natl Acad Sci U S A. 2006 Jun 27;103(26):9935-9. Epub 2006 Jun 15.

PMID:
16777968
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Benchmarking tools for the alignment of functional noncoding DNA.

Pollard DA, Bergman CM, Stoye J, Celniker SE, Eisen MB.

BMC Bioinformatics. 2004 Jan 21;5:6.

PMID:
14736341
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Transposons but not retrotransposons are located preferentially in regions of high recombination rate in Caenorhabditis elegans.

Duret L, Marais G, Biémont C.

Genetics. 2000 Dec;156(4):1661-9.

PMID:
11102365
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Meiotic recombination, noncoding DNA and genomic organization in Caenorhabditis elegans.

Barnes TM, Kohara Y, Coulson A, Hekimi S.

Genetics. 1995 Sep;141(1):159-79.

PMID:
8536965
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Big genomes facilitate the comparative identification of regulatory elements.

Peterson BK, Hare EE, Iyer VN, Storage S, Conner L, Papaj DR, Kurashima R, Jang E, Eisen MB.

PLoS One. 2009;4(3):e4688. doi: 10.1371/journal.pone.0004688. Epub 2009 Mar 4.

PMID:
19259274
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Molecular biology: A fly in the face of genomics.

Furlong EE.

Nature. 2011 Mar 24;471(7339):458-9. doi: 10.1038/471458a. No abstract available.

PMID:
21430772
[PubMed - indexed for MEDLINE]
15.

cis-Regulatory and protein evolution in orthologous and duplicate genes.

Castillo-Davis CI, Hartl DL, Achaz G.

Genome Res. 2004 Aug;14(8):1530-6. Epub 2004 Jul 15.

PMID:
15256508
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Purifying selection maintains highly conserved noncoding sequences in Drosophila.

Casillas S, Barbadilla A, Bergman CM.

Mol Biol Evol. 2007 Oct;24(10):2222-34. Epub 2007 Jul 23.

PMID:
17646256
[PubMed - indexed for MEDLINE]
Free Article
17.

Quantitative trait loci define genes and pathways underlying genetic variation in longevity.

Shmookler Reis RJ, Kang P, Ayyadevara S.

Exp Gerontol. 2006 Oct;41(10):1046-54. Epub 2006 Aug 17. Review.

PMID:
16919411
[PubMed - indexed for MEDLINE]
18.

Genome-scale compositional comparisons in eukaryotes.

Gentles AJ, Karlin S.

Genome Res. 2001 Apr;11(4):540-6.

PMID:
11282969
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Pentamer vocabularies characterizing introns and intron-like intergenic tracts from Caenorhabditis elegans and Drosophila melanogaster.

Bultrini E, Pizzi E, Del Giudice P, Frontali C.

Gene. 2003 Jan 30;304:183-92.

PMID:
12568727
[PubMed - indexed for MEDLINE]
20.

The nematode Caenorhabditis elegans and its genome.

Hodgkin J, Plasterk RH, Waterston RH.

Science. 1995 Oct 20;270(5235):410-4. Review.

PMID:
7569995
[PubMed - indexed for MEDLINE]

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