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Results: 1 to 20 of 75

1.

The mammalian transcriptome and the function of non-coding DNA sequences.

Shabalina SA, Spiridonov NA.

Genome Biol. 2004;5(4):105. Epub 2004 Mar 25. Review.

PMID:
15059247
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

The plasticity of the mammalian transcriptome.

Lindberg J, Lundeberg J.

Genomics. 2010 Jan;95(1):1-6. doi: 10.1016/j.ygeno.2009.08.010. Epub 2009 Aug 28. Review.

PMID:
19716875
[PubMed - indexed for MEDLINE]
Free Article
3.

Silencing the transcriptome's dark matter: mechanisms for suppressing translation of intergenic transcripts.

Bickel KS, Morris DR.

Mol Cell. 2006 May 5;22(3):309-16. Review.

PMID:
16678103
[PubMed - indexed for MEDLINE]
Free Article
4.

Evolutionary discrimination of mammalian conserved non-genic sequences (CNGs).

Dermitzakis ET, Reymond A, Scamuffa N, Ucla C, Kirkness E, Rossier C, Antonarakis SE.

Science. 2003 Nov 7;302(5647):1033-5. Epub 2003 Oct 2.

PMID:
14526086
[PubMed - indexed for MEDLINE]
Free Article
5.

A systematic search for new mammalian noncoding RNAs indicates little conserved intergenic transcription.

Babak T, Blencowe BJ, Hughes TR.

BMC Genomics. 2005 Aug 5;6:104.

PMID:
16083503
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Conserved non-genic sequences - an unexpected feature of mammalian genomes.

Dermitzakis ET, Reymond A, Antonarakis SE.

Nat Rev Genet. 2005 Feb;6(2):151-7. Review.

PMID:
15716910
[PubMed - indexed for MEDLINE]
7.

Functional intergenic transcription: a case study of the X-inactivation centre.

Lee JT.

Philos Trans R Soc Lond B Biol Sci. 2003 Aug 29;358(1436):1417-23; discussion 1423.

PMID:
14511490
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Genome-scale identification of Caenorhabditis elegans regulatory elements by tiling-array mapping of DNase I hypersensitive sites.

Shi B, Guo X, Wu T, Sheng S, Wang J, Skogerbø G, Zhu X, Chen R.

BMC Genomics. 2009 Feb 25;10:92. doi: 10.1186/1471-2164-10-92.

PMID:
19243610
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Functionality of intergenic transcription: an evolutionary comparison.

Khaitovich P, Kelso J, Franz H, Visagie J, Giger T, Joerchel S, Petzold E, Green RE, Lachmann M, Pääbo S.

PLoS Genet. 2006 Oct 13;2(10):e171. Epub 2006 Aug 28.

PMID:
17040132
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

The relationship between non-protein-coding DNA and eukaryotic complexity.

Taft RJ, Pheasant M, Mattick JS.

Bioessays. 2007 Mar;29(3):288-99.

PMID:
17295292
[PubMed - indexed for MEDLINE]
11.

Mouse transcriptome: neutral evolution of 'non-coding' complementary DNAs.

Wang J, Zhang J, Zheng H, Li J, Liu D, Li H, Samudrala R, Yu J, Wong GK.

Nature. 2004 Oct 14;431(7010):1 p following 757; discussion following 757. No abstract available.

PMID:
15495343
[PubMed - indexed for MEDLINE]
12.

ALU-ring elements in the primate genomes.

Grover D, Kannan K, Brahmachari SK, Mukerji M.

Genetica. 2005 Jul;124(2-3):273-89.

PMID:
16134339
[PubMed - indexed for MEDLINE]
13.

Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene.

Martens JA, Laprade L, Winston F.

Nature. 2004 Jun 3;429(6991):571-4.

PMID:
15175754
[PubMed - indexed for MEDLINE]
14.

Employment opportunities for non-coding RNAs.

Morey C, Avner P.

FEBS Lett. 2004 Jun 1;567(1):27-34. Review.

PMID:
15165889
[PubMed - indexed for MEDLINE]
Free Article
15.

Biological function of unannotated transcription during the early development of Drosophila melanogaster.

Manak JR, Dike S, Sementchenko V, Kapranov P, Biemar F, Long J, Cheng J, Bell I, Ghosh S, Piccolboni A, Gingeras TR.

Nat Genet. 2006 Oct;38(10):1151-8. Epub 2006 Sep 3.

PMID:
16951679
[PubMed - indexed for MEDLINE]
16.

Transcribed processed pseudogenes in the human genome: an intermediate form of expressed retrosequence lacking protein-coding ability.

Harrison PM, Zheng D, Zhang Z, Carriero N, Gerstein M.

Nucleic Acids Res. 2005 Apr 28;33(8):2374-83. Print 2005.

PMID:
15860774
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Global identification of human transcribed sequences with genome tiling arrays.

Bertone P, Stolc V, Royce TE, Rozowsky JS, Urban AE, Zhu X, Rinn JL, Tongprasit W, Samanta M, Weissman S, Gerstein M, Snyder M.

Science. 2004 Dec 24;306(5705):2242-6. Epub 2004 Nov 11.

PMID:
15539566
[PubMed - indexed for MEDLINE]
Free Article
18.

Detection of weakly conserved ancestral mammalian regulatory sequences by primate comparisons.

Wang QF, Prabhakar S, Chanan S, Cheng JF, Rubin EM, Boffelli D.

Genome Biol. 2007;8(1):R1.

PMID:
17201929
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Non-coding regulatory regions in genomes. Editorial.

Gomez Skarmeta JL.

Brief Funct Genomic Proteomic. 2009 Jul;8(4):213-4. doi: 10.1093/bfgp/elp034. No abstract available.

PMID:
19752043
[PubMed - indexed for MEDLINE]
Free Article
20.

Constructing the landscape of the mammalian transcriptome.

Carninci P.

J Exp Biol. 2007 May;210(Pt 9):1497-506.

PMID:
17449815
[PubMed - indexed for MEDLINE]
Free Article

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