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Results: 1 to 20 of 111

1.

Application of independent component analysis to microarrays.

Lee SI, Batzoglou S.

Genome Biol. 2003;4(11):R76. Epub 2003 Oct 24.

PMID:
14611662
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Genesis: cluster analysis of microarray data.

Sturn A, Quackenbush J, Trajanoski Z.

Bioinformatics. 2002 Jan;18(1):207-8.

PMID:
11836235
[PubMed - indexed for MEDLINE]
Free Article
3.

Use of gene networks for identifying and validating drug targets.

Imoto S, Savoie CJ, Aburatani S, Kim S, Tashiro K, Kuhara S, Miyano S.

J Bioinform Comput Biol. 2003 Oct;1(3):459-74.

PMID:
15290765
[PubMed - indexed for MEDLINE]
4.

Cluster analysis of dynamic parameters of gene expression.

Wu X, Dewey TG.

J Bioinform Comput Biol. 2003 Oct;1(3):447-58.

PMID:
15290764
[PubMed - indexed for MEDLINE]
5.

Possibilistic approach for biclustering microarray data.

Cano C, Adarve L, López J, Blanco A.

Comput Biol Med. 2007 Oct;37(10):1426-36. Epub 2007 Mar 8.

PMID:
17346690
[PubMed - indexed for MEDLINE]
6.

Knowledge-guided multi-scale independent component analysis for biomarker identification.

Chen L, Xuan J, Wang C, Shih IeM, Wang Y, Zhang Z, Hoffman E, Clarke R.

BMC Bioinformatics. 2008 Oct 6;9:416. doi: 10.1186/1471-2105-9-416.

PMID:
18837990
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

The clustering of regression models method with applications in gene expression data.

Qin LX, Self SG.

Biometrics. 2006 Jun;62(2):526-33.

PMID:
16918917
[PubMed - indexed for MEDLINE]
8.

Detecting clusters of different geometrical shapes in microarray gene expression data.

Kim DW, Lee KH, Lee D.

Bioinformatics. 2005 May 1;21(9):1927-34. Epub 2005 Jan 12.

PMID:
15647300
[PubMed - indexed for MEDLINE]
Free Article
9.

A novel coherence measure for discovering scaling biclusters from gene expression data.

Mukhopadhyay A, Maulik U, Bandyopadhyay S.

J Bioinform Comput Biol. 2009 Oct;7(5):853-68.

PMID:
19785049
[PubMed - indexed for MEDLINE]
10.

Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data.

Segal E, Shapira M, Regev A, Pe'er D, Botstein D, Koller D, Friedman N.

Nat Genet. 2003 Jun;34(2):166-76.

PMID:
12740579
[PubMed - indexed for MEDLINE]
11.

Decomposing gene expression into cellular processes.

Segal E, Battle A, Koller D.

Pac Symp Biocomput. 2003:89-100.

PMID:
12603020
[PubMed - indexed for MEDLINE]
12.

Clustering gene-expression data with repeated measurements.

Yeung KY, Medvedovic M, Bumgarner RE.

Genome Biol. 2003;4(5):R34. Epub 2003 Apr 25.

PMID:
12734014
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

DNA microarray data and contextual analysis of correlation graphs.

Rougemont J, Hingamp P.

BMC Bioinformatics. 2003 Apr 29;4:15. Epub 2003 Apr 29.

PMID:
12720549
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Biclustering algorithms for biological data analysis: a survey.

Madeira SC, Oliveira AL.

IEEE/ACM Trans Comput Biol Bioinform. 2004 Jan-Mar;1(1):24-45.

PMID:
17048406
[PubMed - indexed for MEDLINE]
15.

Interactively optimizing signal-to-noise ratios in expression profiling: project-specific algorithm selection and detection p-value weighting in Affymetrix microarrays.

Seo J, Bakay M, Chen YW, Hilmer S, Shneiderman B, Hoffman EP.

Bioinformatics. 2004 Nov 1;20(16):2534-44. Epub 2004 Apr 29.

PMID:
15117752
[PubMed - indexed for MEDLINE]
Free Article
16.

Novel clustering algorithm for microarray expression data in a truncated SVD space.

Horn D, Axel I.

Bioinformatics. 2003 Jun 12;19(9):1110-5. Erratum in: Bioinformatics. 2003 Oct 12;19(15):2004.

PMID:
12801871
[PubMed - indexed for MEDLINE]
Free Article
17.

Modified fuzzy gap statistic for estimating preferable number of clusters in fuzzy k-means clustering.

Arima C, Hakamada K, Okamoto M, Hanai T.

J Biosci Bioeng. 2008 Mar;105(3):273-81. doi: 10.1263/jbb.105.273.

PMID:
18397779
[PubMed - indexed for MEDLINE]
Free Article
18.

Randomized maps for assessing the reliability of patients clusters in DNA microarray data analyses.

Bertoni A, Valentini G.

Artif Intell Med. 2006 Jun;37(2):85-109. Epub 2006 May 23.

PMID:
16720093
[PubMed - indexed for MEDLINE]
19.

Assessing gene significance from cDNA microarray expression data via mixed models.

Wolfinger RD, Gibson G, Wolfinger ED, Bennett L, Hamadeh H, Bushel P, Afshari C, Paules RS.

J Comput Biol. 2001;8(6):625-37.

PMID:
11747616
[PubMed - indexed for MEDLINE]
20.

Hierarchical signature clustering for time series microarray data.

Koenig L, Youn E.

Adv Exp Med Biol. 2011;696:57-65. doi: 10.1007/978-1-4419-7046-6_6.

PMID:
21431546
[PubMed - indexed for MEDLINE]

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