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Results: 1 to 20 of 207

1.

The source of laterally transferred genes in bacterial genomes.

Daubin V, Lerat E, Perrière G.

Genome Biol. 2003;4(9):R57. Epub 2003 Aug 21.

PMID:
12952536
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

A genomic survey of the fish parasite Spironucleus salmonicida indicates genomic plasticity among diplomonads and significant lateral gene transfer in eukaryote genome evolution.

Andersson JO, Sjögren AM, Horner DS, Murphy CA, Dyal PL, Svärd SG, Logsdon JM Jr, Ragan MA, Hirt RP, Roger AJ.

BMC Genomics. 2007 Feb 14;8:51.

PMID:
17298675
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Compositional correlation studies among the three different codon positions in 12 bacterial genomes.

Majumdar S, Gupta SK, Sundararajan VS, Ghosh TC.

Biochem Biophys Res Commun. 1999 Dec 9;266(1):66-71.

PMID:
10581166
[PubMed - indexed for MEDLINE]
4.

Speciation in Chlamydia: genomewide phylogenetic analyses identified a reliable set of acquired genes.

Ortutay C, Gáspári Z, Tóth G, Jáger E, Vida G, Orosz L, Vellai T.

J Mol Evol. 2003 Dec;57(6):672-80.

PMID:
14745536
[PubMed - indexed for MEDLINE]
5.

Horizontal gene transfer and nucleotide compositional anomaly in large DNA viruses.

Monier A, Claverie JM, Ogata H.

BMC Genomics. 2007 Dec 10;8:456.

PMID:
18070355
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Limitations of compositional approach to identifying horizontally transferred genes.

Wang B.

J Mol Evol. 2001 Sep;53(3):244-50.

PMID:
11523011
[PubMed - indexed for MEDLINE]
7.

Evolution of mosaic operons by horizontal gene transfer and gene displacement in situ.

Omelchenko MV, Makarova KS, Wolf YI, Rogozin IB, Koonin EV.

Genome Biol. 2003;4(9):R55. Epub 2003 Aug 29.

PMID:
12952534
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Seven GC-rich microbial genomes adopt similar codon usage patterns regardless of their phylogenetic lineages.

Chen LL, Zhang CT.

Biochem Biophys Res Commun. 2003 Jun 20;306(1):310-7.

PMID:
12788106
[PubMed - indexed for MEDLINE]
9.

Amelioration of bacterial genomes: rates of change and exchange.

Lawrence JG, Ochman H.

J Mol Evol. 1997 Apr;44(4):383-97.

PMID:
9089078
[PubMed - indexed for MEDLINE]
10.

Intragenomic base content variation is a potential source of biases when searching for horizontally transferred genes.

Guindon S, Perrière G.

Mol Biol Evol. 2001 Sep;18(9):1838-40. No abstract available.

PMID:
11504864
[PubMed - indexed for MEDLINE]
Free Article
11.

A hidden reservoir of integrative elements is the major source of recently acquired foreign genes and ORFans in archaeal and bacterial genomes.

Cortez D, Forterre P, Gribaldo S.

Genome Biol. 2009;10(6):R65. doi: 10.1186/gb-2009-10-6-r65. Epub 2009 Jun 16.

PMID:
19531232
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Lateral gene transfer in Mycobacterium avium subspecies paratuberculosis.

Marri PR, Bannantine JP, Paustian ML, Golding GB.

Can J Microbiol. 2006 Jun;52(6):560-9.

PMID:
16788724
[PubMed - indexed for MEDLINE]
13.

Synonymous codon usage is subject to selection in thermophilic bacteria.

Lynn DJ, Singer GA, Hickey DA.

Nucleic Acids Res. 2002 Oct 1;30(19):4272-7.

PMID:
12364606
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm.

Podell S, Gaasterland T, Allen EE.

BMC Bioinformatics. 2008 Oct 7;9:419. doi: 10.1186/1471-2105-9-419.

PMID:
18840280
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Detecting horizontally transferred and essential genes based on dinucleotide relative abundance.

Baran RH, Ko H.

DNA Res. 2008 Oct;15(5):267-76. doi: 10.1093/dnares/dsn021. Epub 2008 Sep 16.

PMID:
18799480
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Examining bacterial species under the specter of gene transfer and exchange.

Ochman H, Lerat E, Daubin V.

Proc Natl Acad Sci U S A. 2005 May 3;102 Suppl 1:6595-9. Epub 2005 Apr 25. Review.

PMID:
15851673
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Synonymous codon usage in Pseudomonas aeruginosa PA01.

Grocock RJ, Sharp PM.

Gene. 2002 May 1;289(1-2):131-9.

PMID:
12036591
[PubMed - indexed for MEDLINE]
19.

Same-strand overlapping genes in bacteria: compositional determinants of phase bias.

Sabath N, Graur D, Landan G.

Biol Direct. 2008 Aug 21;3:36. doi: 10.1186/1745-6150-3-36.

PMID:
18717987
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

A complex and punctate distribution of three eukaryotic genes derived by lateral gene transfer.

Rogers MB, Watkins RF, Harper JT, Durnford DG, Gray MW, Keeling PJ.

BMC Evol Biol. 2007 Jun 11;7:89.

PMID:
17562012
[PubMed - indexed for MEDLINE]
Free PMC Article

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