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Results: 1 to 20 of 120

1.

An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR).

Reed JL, Vo TD, Schilling CH, Palsson BO.

Genome Biol. 2003;4(9):R54. Epub 2003 Aug 28.

PMID:
12952533
[PubMed - indexed for MEDLINE]
Free PMC Article
2.
4.

The evolution of metabolic networks of E. coli.

Baumler DJ, Peplinski RG, Reed JL, Glasner JD, Perna NT.

BMC Syst Biol. 2011 Nov 1;5:182. doi: 10.1186/1752-0509-5-182.

PMID:
22044664
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Genome-scale in silico aided metabolic analysis and flux comparisons of Escherichia coli to improve succinate production.

Wang Q, Chen X, Yang Y, Zhao X.

Appl Microbiol Biotechnol. 2006 Dec;73(4):887-94. Epub 2006 Aug 23.

PMID:
16927085
[PubMed - indexed for MEDLINE]
6.

Description and interpretation of adaptive evolution of Escherichia coli K-12 MG1655 by using a genome-scale in silico metabolic model.

Fong SS, Marciniak JY, Palsson BØ.

J Bacteriol. 2003 Nov;185(21):6400-8.

PMID:
14563875
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Analysis of genome plasticity in pathogenic and commensal Escherichia coli isolates by use of DNA arrays.

Dobrindt U, Agerer F, Michaelis K, Janka A, Buchrieser C, Samuelson M, Svanborg C, Gottschalk G, Karch H, Hacker J.

J Bacteriol. 2003 Mar;185(6):1831-40.

PMID:
12618447
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

The Escherichia coli MG1655 in silico metabolic genotype: its definition, characteristics, and capabilities.

Edwards JS, Palsson BO.

Proc Natl Acad Sci U S A. 2000 May 9;97(10):5528-33.

PMID:
10805808
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Genomic peculiarity of coding sequences and metabolic potential of probiotic Escherichia coli strain Nissle 1917 inferred from raw genome data.

Sun J, Gunzer F, Westendorf AM, Buer J, Scharfe M, Jarek M, Gössling F, Blöcker H, Zeng AP.

J Biotechnol. 2005 May 4;117(2):147-61.

PMID:
15823404
[PubMed - indexed for MEDLINE]
10.

A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information.

Feist AM, Henry CS, Reed JL, Krummenacker M, Joyce AR, Karp PD, Broadbelt LJ, Hatzimanikatis V, Palsson BØ.

Mol Syst Biol. 2007;3:121. Epub 2007 Jun 26.

PMID:
17593909
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Metabolic flux balance analysis and the in silico analysis of Escherichia coli K-12 gene deletions.

Edwards JS, Palsson BO.

BMC Bioinformatics. 2000;1:1. Epub 2000 Jul 27.

PMID:
11001586
[PubMed - indexed for MEDLINE]
Free PMC Article
12.
13.

Genome-scale thermodynamic analysis of Escherichia coli metabolism.

Henry CS, Jankowski MD, Broadbelt LJ, Hatzimanikatis V.

Biophys J. 2006 Feb 15;90(4):1453-61. Epub 2005 Nov 18.

PMID:
16299075
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Genome-scale analysis to the impact of gene deletion on the metabolism of E. coli: constraint-based simulation approach.

Xu Z, Sun X, Yu S.

BMC Bioinformatics. 2009 Jan 30;10 Suppl 1:S62. doi: 10.1186/1471-2105-10-S1-S62.

PMID:
19208166
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Characterization of the flexible genome complement of the commensal Escherichia coli strain A0 34/86 (O83 : K24 : H31).

Hejnova J, Dobrindt U, Nemcova R, Rusniok C, Bomba A, Frangeul L, Hacker J, Glaser P, Sebo P, Buchrieser C.

Microbiology. 2005 Feb;151(Pt 2):385-98.

PMID:
15699189
[PubMed - indexed for MEDLINE]
Free Article
16.

Can the whole be less than the sum of its parts? Pathway analysis in genome-scale metabolic networks using elementary flux patterns.

Kaleta C, de Figueiredo LF, Schuster S.

Genome Res. 2009 Oct;19(10):1872-83. doi: 10.1101/gr.090639.108. Epub 2009 Jun 18.

PMID:
19541909
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Comparative multi-omics systems analysis of Escherichia coli strains B and K-12.

Yoon SH, Han MJ, Jeong H, Lee CH, Xia XX, Lee DH, Shim JH, Lee SY, Oh TK, Kim JF.

Genome Biol. 2012 May 25;13(5):R37. doi: 10.1186/gb-2012-13-5-r37.

PMID:
22632713
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network.

Förster J, Famili I, Fu P, Palsson BØ, Nielsen J.

Genome Res. 2003 Feb;13(2):244-53.

PMID:
12566402
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Systematic analysis of conservation relations in Escherichia coli genome-scale metabolic network reveals novel growth media.

Imielinski M, Belta C, Rubin H, Halász A.

Biophys J. 2006 Apr 15;90(8):2659-72. Epub 2006 Feb 3. Erratum in: Biophys J. 2007 Jul 15;93(2):704.

PMID:
16461408
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Interaction network containing conserved and essential protein complexes in Escherichia coli.

Butland G, Peregrín-Alvarez JM, Li J, Yang W, Yang X, Canadien V, Starostine A, Richards D, Beattie B, Krogan N, Davey M, Parkinson J, Greenblatt J, Emili A.

Nature. 2005 Feb 3;433(7025):531-7.

PMID:
15690043
[PubMed - indexed for MEDLINE]

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