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Results: 1 to 20 of 106

1.

DAVID: Database for Annotation, Visualization, and Integrated Discovery.

Dennis G Jr, Sherman BT, Hosack DA, Yang J, Gao W, Lane HC, Lempicki RA.

Genome Biol. 2003;4(5):P3. Epub 2003 Apr 3.

PMID:
12734009
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists.

Huang da W, Sherman BT, Tan Q, Kir J, Liu D, Bryant D, Guo Y, Stephens R, Baseler MW, Lane HC, Lempicki RA.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W169-75. Epub 2007 Jun 18.

PMID:
17576678
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis.

Sherman BT, Huang da W, Tan Q, Guo Y, Bour S, Liu D, Stephens R, Baseler MW, Lane HC, Lempicki RA.

BMC Bioinformatics. 2007 Nov 2;8:426.

PMID:
17980028
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Algal Functional Annotation Tool: a web-based analysis suite to functionally interpret large gene lists using integrated annotation and expression data.

Lopez D, Casero D, Cokus SJ, Merchant SS, Pellegrini M.

BMC Bioinformatics. 2011 Jul 12;12:282. doi: 10.1186/1471-2105-12-282.

PMID:
21749710
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

GeneMesh: a web-based microarray analysis tool for relating differentially expressed genes to MeSH terms.

Jani SD, Argraves GL, Barth JL, Argraves WS.

BMC Bioinformatics. 2010 Apr 1;11:166. doi: 10.1186/1471-2105-11-166.

PMID:
20359363
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Interleukin-27 induces interferon-inducible genes: analysis of gene expression profiles using Affymetrix microarray and DAVID.

Imamichi T, Yang J, Huang da W, Sherman B, Lempicki RA.

Methods Mol Biol. 2012;820:25-53. doi: 10.1007/978-1-61779-439-1_3.

PMID:
22131024
[PubMed - indexed for MEDLINE]
7.

Structural and functional-annotation of an equine whole genome oligoarray.

Bright LA, Burgess SC, Chowdhary B, Swiderski CE, McCarthy FM.

BMC Bioinformatics. 2009 Oct 8;10 Suppl 11:S8. doi: 10.1186/1471-2105-10-S11-S8.

PMID:
19811692
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

GEM-TREND: a web tool for gene expression data mining toward relevant network discovery.

Feng C, Araki M, Kunimoto R, Tamon A, Makiguchi H, Niijima S, Tsujimoto G, Okuno Y.

BMC Genomics. 2009 Sep 3;10:411. doi: 10.1186/1471-2164-10-411.

PMID:
19728865
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

MILANO--custom annotation of microarray results using automatic literature searches.

Rubinstein R, Simon I.

BMC Bioinformatics. 2005 Jan 20;6:12.

PMID:
15661078
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

DAVID-WS: a stateful web service to facilitate gene/protein list analysis.

Jiao X, Sherman BT, Huang da W, Stephens R, Baseler MW, Lane HC, Lempicki RA.

Bioinformatics. 2012 Jul 1;28(13):1805-6. doi: 10.1093/bioinformatics/bts251. Epub 2012 Apr 27.

PMID:
22543366
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Inherited disorder phenotypes: controlled annotation and statistical analysis for knowledge mining from gene lists.

Masseroli M, Galati O, Manzotti M, Gibert K, Pinciroli F.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S18.

PMID:
16351744
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

GFINDer: Genome Function INtegrated Discoverer through dynamic annotation, statistical analysis, and mining.

Masseroli M, Martucci D, Pinciroli F.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W293-300.

PMID:
15215397
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L.) methylation filtered genomic genespace sequences.

Chen X, Laudeman TW, Rushton PJ, Spraggins TA, Timko MP.

BMC Bioinformatics. 2007 Apr 19;8:129.

PMID:
17445272
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Extracting biological meaning from large gene lists with DAVID.

Huang da W, Sherman BT, Zheng X, Yang J, Imamichi T, Stephens R, Lempicki RA.

Curr Protoc Bioinformatics. 2009 Sep;Chapter 13:Unit 13.11. doi: 10.1002/0471250953.bi1311s27.

PMID:
19728287
[PubMed - indexed for MEDLINE]
15.

Gene set internal coherence in the context of functional profiling.

Montaner D, Minguez P, Al-Shahrour F, Dopazo J.

BMC Genomics. 2009 Apr 27;10:197. doi: 10.1186/1471-2164-10-197.

PMID:
19397819
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

EMAAS: an extensible grid-based rich internet application for microarray data analysis and management.

Barton G, Abbott J, Chiba N, Huang DW, Huang Y, Krznaric M, Mack-Smith J, Saleem A, Sherman BT, Tiwari B, Tomlinson C, Aitman T, Darlington J, Game L, Sternberg MJ, Butcher SA.

BMC Bioinformatics. 2008 Nov 25;9:493. doi: 10.1186/1471-2105-9-493.

PMID:
19032776
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

DRAGON: Database Referencing of Array Genes Online.

Bouton CM, Pevsner J.

Bioinformatics. 2000 Nov;16(11):1038-9.

PMID:
11159315
[PubMed - indexed for MEDLINE]
Free Article
18.

GARBAN: genomic analysis and rapid biological annotation of cDNA microarray and proteomic data.

Martínez-Cruz LA, Rubio A, Martínez-Chantar ML, Labarga A, Barrio I, Podhorski A, Segura V, Sevilla Campo JL, Avila MA, Mato JM.

Bioinformatics. 2003 Nov 1;19(16):2158-60.

PMID:
14594726
[PubMed - indexed for MEDLINE]
Free Article
19.

Comparing gene annotation enrichment tools for functional modeling of agricultural microarray data.

van den Berg BH, Thanthiriwatte C, Manda P, Bridges SM.

BMC Bioinformatics. 2009 Oct 8;10 Suppl 11:S9. doi: 10.1186/1471-2105-10-S11-S9.

PMID:
19811693
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

GeneCruiser: a web service for the annotation of microarray data.

Liefeld T, Reich M, Gould J, Zhang P, Tamayo P, Mesirov JP.

Bioinformatics. 2005 Sep 15;21(18):3681-2. Epub 2005 Jul 19.

PMID:
16030072
[PubMed - indexed for MEDLINE]
Free Article

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