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Results: 1 to 20 of 73

1.

GoMiner: a resource for biological interpretation of genomic and proteomic data.

Zeeberg BR, Feng W, Wang G, Wang MD, Fojo AT, Sunshine M, Narasimhan S, Kane DW, Reinhold WC, Lababidi S, Bussey KJ, Riss J, Barrett JC, Weinstein JN.

Genome Biol. 2003;4(4):R28. Epub 2003 Mar 25.

PMID:
12702209
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Development of gene ontology tool for biological interpretation of genomic and proteomic data.

Feng W, Wang G, Zeeberg BR, Guo K, Fojo AT, Kane DW, Reinhold WC, Lababidi S, Weinstein JN, Wang MD.

AMIA Annu Symp Proc. 2003:839.

PMID:
14728344
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

High-Throughput GoMiner, an 'industrial-strength' integrative gene ontology tool for interpretation of multiple-microarray experiments, with application to studies of Common Variable Immune Deficiency (CVID).

Zeeberg BR, Qin H, Narasimhan S, Sunshine M, Cao H, Kane DW, Reimers M, Stephens RM, Bryant D, Burt SK, Elnekave E, Hari DM, Wynn TA, Cunningham-Rundles C, Stewart DM, Nelson D, Weinstein JN.

BMC Bioinformatics. 2005 Jul 5;6:168.

PMID:
15998470
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

GOTree Machine (GOTM): a web-based platform for interpreting sets of interesting genes using Gene Ontology hierarchies.

Zhang B, Schmoyer D, Kirov S, Snoddy J.

BMC Bioinformatics. 2004 Feb 18;5:16.

PMID:
14975175
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

MILANO--custom annotation of microarray results using automatic literature searches.

Rubinstein R, Simon I.

BMC Bioinformatics. 2005 Jan 20;6:12.

PMID:
15661078
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists.

Huang da W, Sherman BT, Tan Q, Kir J, Liu D, Bryant D, Guo Y, Stephens R, Baseler MW, Lane HC, Lempicki RA.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W169-75. Epub 2007 Jun 18.

PMID:
17576678
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

HDBStat!: a platform-independent software suite for statistical analysis of high dimensional biology data.

Trivedi P, Edwards JW, Wang J, Gadbury GL, Srinivasasainagendra V, Zakharkin SO, Kim K, Mehta T, Brand JP, Patki A, Page GP, Allison DB.

BMC Bioinformatics. 2005 Apr 6;6:86.

PMID:
15813968
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Identifying biological themes within lists of genes with EASE.

Hosack DA, Dennis G Jr, Sherman BT, Lane HC, Lempicki RA.

Genome Biol. 2003;4(10):R70. Epub 2003 Sep 11.

PMID:
14519205
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

PathMAPA: a tool for displaying gene expression and performing statistical tests on metabolic pathways at multiple levels for Arabidopsis.

Pan D, Sun N, Cheung KH, Guan Z, Ma L, Holford M, Deng X, Zhao H.

BMC Bioinformatics. 2003 Nov 7;4:56.

PMID:
14604444
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

PubMatrix: a tool for multiplex literature mining.

Becker KG, Hosack DA, Dennis G Jr, Lempicki RA, Bright TJ, Cheadle C, Engel J.

BMC Bioinformatics. 2003 Dec 10;4:61.

PMID:
14667255
[PubMed - indexed for MEDLINE]
Free PMC Article
11.
12.

ProGenExpress: visualization of quantitative data on prokaryotic genomes.

Watson M.

BMC Bioinformatics. 2005 Apr 13;6:98.

PMID:
15829007
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Applications of Tree-Maps to hierarchical biological data.

McConnell P, Johnson K, Lin S.

Bioinformatics. 2002 Sep;18(9):1278-9.

PMID:
12217926
[PubMed - indexed for MEDLINE]
Free Article
14.

Bioinformatics/biostatistics: microarray analysis.

Eichler GS.

Methods Mol Biol. 2012;823:347-58. doi: 10.1007/978-1-60327-216-2_22.

PMID:
22081356
[PubMed - indexed for MEDLINE]
15.

GATExplorer: genomic and transcriptomic explorer; mapping expression probes to gene loci, transcripts, exons and ncRNAs.

RisueƱo A, Fontanillo C, Dinger ME, De Las Rivas J.

BMC Bioinformatics. 2010 Apr 29;11:221. doi: 10.1186/1471-2105-11-221.

PMID:
20429936
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

EGOMiner: a comprehensive genomics and proteomics data analysis and biological function interpretation system.

Feng W, Henning P, Wang MD.

Conf Proc IEEE Eng Med Biol Soc. 2004;4:2809-12.

PMID:
17270861
[PubMed]
17.

ArrayXPath: mapping and visualizing microarray gene-expression data with integrated biological pathway resources using Scalable Vector Graphics.

Chung HJ, Kim M, Park CH, Kim J, Kim JH.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W460-4.

PMID:
15215430
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

GOFFA: gene ontology for functional analysis--a FDA gene ontology tool for analysis of genomic and proteomic data.

Sun H, Fang H, Chen T, Perkins R, Tong W.

BMC Bioinformatics. 2006 Sep 6;7 Suppl 2:S23.

PMID:
17118145
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

A novel method for large tree visualization.

Heard J, Kaufmann W, Guan X.

Bioinformatics. 2009 Feb 15;25(4):557-8. doi: 10.1093/bioinformatics/btn656. Epub 2009 Jan 7.

PMID:
19129207
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Visualization and analysis of microarray and gene ontology data with treemaps.

Baehrecke EH, Dang N, Babaria K, Shneiderman B.

BMC Bioinformatics. 2004 Jun 28;5:84.

PMID:
15222902
[PubMed - indexed for MEDLINE]
Free PMC Article

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