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Results: 1 to 20 of 466

1.

The rhomboids: a nearly ubiquitous family of intramembrane serine proteases that probably evolved by multiple ancient horizontal gene transfers.

Koonin EV, Makarova KS, Rogozin IB, Davidovic L, Letellier MC, Pellegrini L.

Genome Biol. 2003;4(3):R19. Epub 2003 Feb 28.

PMID:
12620104
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Conservation of intramembrane proteolytic activity and substrate specificity in prokaryotic and eukaryotic rhomboids.

Urban S, Schlieper D, Freeman M.

Curr Biol. 2002 Sep 3;12(17):1507-12.

PMID:
12225666
[PubMed - indexed for MEDLINE]
Free Article
3.
4.

A novel family of P-loop NTPases with an unusual phyletic distribution and transmembrane segments inserted within the NTPase domain.

Aravind L, Iyer LM, Leipe DD, Koonin EV.

Genome Biol. 2004;5(5):R30. Epub 2004 Apr 16.

PMID:
15128444
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Molecular evolution before the origin of species.

Davis BK.

Prog Biophys Mol Biol. 2002 May-Jul;79(1-3):77-133. Review.

PMID:
12225777
[PubMed - indexed for MEDLINE]
6.

Intramembrane proteolysis of Mgm1 by the mitochondrial rhomboid protease is highly promiscuous regarding the sequence of the cleaved hydrophobic segment.

Schäfer A, Zick M, Kief J, Steger M, Heide H, Duvezin-Caubet S, Neupert W, Reichert AS.

J Mol Biol. 2010 Aug 13;401(2):182-93. doi: 10.1016/j.jmb.2010.06.014. Epub 2010 Jun 15.

PMID:
20558178
[PubMed - indexed for MEDLINE]
7.

Rhomboid-like proteins in Apicomplexa: phylogeny and nomenclature.

Dowse TJ, Soldati D.

Trends Parasitol. 2005 Jun;21(6):254-8. Review.

PMID:
15922242
[PubMed - indexed for MEDLINE]
8.

Functional and evolutionary implications of enhanced genomic analysis of rhomboid intramembrane proteases.

Lemberg MK, Freeman M.

Genome Res. 2007 Nov;17(11):1634-46. Epub 2007 Oct 15.

PMID:
17938163
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

The origins of modern proteomes.

Kurland CG, Canbäck B, Berg OG.

Biochimie. 2007 Dec;89(12):1454-63. Epub 2007 Sep 15.

PMID:
17949885
[PubMed - indexed for MEDLINE]
10.

Classification of the caspase-hemoglobinase fold: detection of new families and implications for the origin of the eukaryotic separins.

Aravind L, Koonin EV.

Proteins. 2002 Mar 1;46(4):355-67.

PMID:
11835511
[PubMed - indexed for MEDLINE]
11.

Bioinformatics perspective on rhomboid intramembrane protease evolution and function.

Kinch LN, Grishin NV.

Biochim Biophys Acta. 2013 Dec;1828(12):2937-43. doi: 10.1016/j.bbamem.2013.06.031. Epub 2013 Jul 8. Review.

PMID:
23845876
[PubMed - indexed for MEDLINE]
12.
13.
14.

Comparison of archaeal and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea.

Koonin EV, Mushegian AR, Galperin MY, Walker DR.

Mol Microbiol. 1997 Aug;25(4):619-37.

PMID:
9379893
[PubMed - indexed for MEDLINE]
15.

Rhomboid homologs in mycobacteria: insights from phylogeny and genomic analysis.

Kateete DP, Okee M, Katabazi FA, Okeng A, Asiimwe J, Boom HW, Eisenach KD, Joloba ML.

BMC Microbiol. 2010 Oct 29;10:272. doi: 10.1186/1471-2180-10-272.

PMID:
21029479
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Cross genome comparisons of serine proteases in Arabidopsis and rice.

Tripathi LP, Sowdhamini R.

BMC Genomics. 2006 Aug 9;7:200.

PMID:
16895613
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell.

Makarova KS, Aravind L, Galperin MY, Grishin NV, Tatusov RL, Wolf YI, Koonin EV.

Genome Res. 1999 Jul;9(7):608-28.

PMID:
10413400
[PubMed - indexed for MEDLINE]
Free Article
18.

The evolutionary history of carbamoyltransferases: A complex set of paralogous genes was already present in the last universal common ancestor.

Labedan B, Boyen A, Baetens M, Charlier D, Chen P, Cunin R, Durbeco V, Glansdorff N, Herve G, Legrain C, Liang Z, Purcarea C, Roovers M, Sanchez R, Toong TL, Van de Casteele M, van Vliet F, Xu Y, Zhang YF.

J Mol Evol. 1999 Oct;49(4):461-73.

PMID:
10486004
[PubMed - indexed for MEDLINE]
19.

A conserved mechanism for extracellular signaling in eukaryotes and prokaryotes.

Gallio M, Sturgill G, Rather P, Kylsten P.

Proc Natl Acad Sci U S A. 2002 Sep 17;99(19):12208-13. Epub 2002 Sep 9.

PMID:
12221285
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Drosophila rhomboid-1 defines a family of putative intramembrane serine proteases.

Urban S, Lee JR, Freeman M.

Cell. 2001 Oct 19;107(2):173-82.

PMID:
11672525
[PubMed - indexed for MEDLINE]
Free Article

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