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Results: 1 to 20 of 67

1.

Towards reconstruction of gene networks from expression data by supervised learning.

Soinov LA, Krestyaninova MA, Brazma A.

Genome Biol. 2003;4(1):R6. Epub 2003 Jan 6.

PMID:
12540298
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

A novel model-free approach for reconstruction of time-delayed gene regulatory networks.

Jiang W, Li X, Guo Z, Li C, Wang L, Rao S.

Sci China C Life Sci. 2006 Apr;49(2):190-200.

PMID:
16704123
[PubMed - indexed for MEDLINE]
3.

A copula method for modeling directional dependence of genes.

Kim JM, Jung YS, Sungur EA, Han KH, Park C, Sohn I.

BMC Bioinformatics. 2008 May 1;9:225. doi: 10.1186/1471-2105-9-225.

PMID:
18447957
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Reconstructing genetic networks from time ordered gene expression data using Bayesian method with global search algorithm.

Wang SC.

J Bioinform Comput Biol. 2004 Sep;2(3):441-58.

PMID:
15359420
[PubMed - indexed for MEDLINE]
5.

Constructing gene co-expression networks and predicting functions of unknown genes by random matrix theory.

Luo F, Yang Y, Zhong J, Gao H, Khan L, Thompson DK, Zhou J.

BMC Bioinformatics. 2007 Aug 14;8:299.

PMID:
17697349
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Quantitative characterization of the transcriptional regulatory network in the yeast cell cycle.

Chen HC, Lee HC, Lin TY, Li WH, Chen BS.

Bioinformatics. 2004 Aug 12;20(12):1914-27. Epub 2004 Mar 25.

PMID:
15044243
[PubMed - indexed for MEDLINE]
Free Article
7.

Supervised classification for gene network reconstruction.

Soinov LA.

Biochem Soc Trans. 2003 Dec;31(Pt 6):1497-502.

PMID:
14641098
[PubMed - indexed for MEDLINE]
8.

An ensemble learning approach to reverse-engineering transcriptional regulatory networks from time-series gene expression data.

Ruan J, Deng Y, Perkins EJ, Zhang W.

BMC Genomics. 2009 Jul 7;10 Suppl 1:S8. doi: 10.1186/1471-2164-10-S1-S8.

PMID:
19594885
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

A hybrid Bayesian network learning method for constructing gene networks.

Wang M, Chen Z, Cloutier S.

Comput Biol Chem. 2007 Oct;31(5-6):361-72. Epub 2007 Aug 19.

PMID:
17889617
[PubMed - indexed for MEDLINE]
10.

Inferring adaptive regulation thresholds and association rules from gene expression data through combinatorial optimization learning.

Ponzoni I, Azuaje F, Augusto J, Glass D.

IEEE/ACM Trans Comput Biol Bioinform. 2007 Oct-Dec;4(4):624-34.

PMID:
17975273
[PubMed - indexed for MEDLINE]
11.

Gene networks reconstruction and time-series prediction from microarray data using recurrent neural fuzzy networks.

Maraziotis IA, Dragomir A, Bezerianos A.

IET Syst Biol. 2007 Jan;1(1):41-50.

PMID:
17370428
[PubMed - indexed for MEDLINE]
12.

Discovering time-lagged rules from microarray data using gene profile classifiers.

Gallo CA, Carballido JA, Ponzoni I.

BMC Bioinformatics. 2011 Apr 27;12:123. doi: 10.1186/1471-2105-12-123.

PMID:
21524308
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Dynamic algorithm for inferring qualitative models of gene regulatory networks.

Yun Z, Keong KC.

Proc IEEE Comput Syst Bioinform Conf. 2004:353-62.

PMID:
16448028
[PubMed - indexed for MEDLINE]
14.

Inferring gene regulatory networks by integrating static and dynamic data.

Ferrazzi F, Magni P, Sacchi L, Nuzzo A, Petrovic U, Bellazzi R.

Int J Med Inform. 2007 Dec;76 Suppl 3:S462-75. Epub 2007 Sep 6.

PMID:
17825607
[PubMed - indexed for MEDLINE]
15.

Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data.

Segal E, Shapira M, Regev A, Pe'er D, Botstein D, Koller D, Friedman N.

Nat Genet. 2003 Jun;34(2):166-76.

PMID:
12740579
[PubMed - indexed for MEDLINE]
16.

Identification of temporal association rules from time-series microarray data sets.

Nam H, Lee K, Lee D.

BMC Bioinformatics. 2009 Mar 19;10 Suppl 3:S6. doi: 10.1186/1471-2105-10-S3-S6.

PMID:
19344482
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

A Gibbs sampler for the identification of gene expression and network connectivity consistency.

Brynildsen MP, Tran LM, Liao JC.

Bioinformatics. 2006 Dec 15;22(24):3040-6. Epub 2006 Oct 23.

PMID:
17060361
[PubMed - indexed for MEDLINE]
Free Article
18.

Defining transcription modules using large-scale gene expression data.

Ihmels J, Bergmann S, Barkai N.

Bioinformatics. 2004 Sep 1;20(13):1993-2003. Epub 2004 Mar 25.

PMID:
15044247
[PubMed - indexed for MEDLINE]
Free Article
19.

A Boolean algorithm for reconstructing the structure of regulatory networks.

Mehra S, Hu WS, Karypis G.

Metab Eng. 2004 Oct;6(4):326-39.

PMID:
15491862
[PubMed - indexed for MEDLINE]
20.

AVID: an integrative framework for discovering functional relationships among proteins.

Jiang T, Keating AE.

BMC Bioinformatics. 2005 Jun 1;6:136.

PMID:
15929793
[PubMed - indexed for MEDLINE]
Free PMC Article

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