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Results: 1 to 20 of 187

1.

Annotation of the Drosophila melanogaster euchromatic genome: a systematic review.

Misra S, Crosby MA, Mungall CJ, Matthews BB, Campbell KS, Hradecky P, Huang Y, Kaminker JS, Millburn GH, Prochnik SE, Smith CD, Tupy JL, Whitfied EJ, Bayraktaroglu L, Berman BP, Bettencourt BR, Celniker SE, de Grey AD, Drysdale RA, Harris NL, Richter J, Russo S, Schroeder AJ, Shu SQ, Stapleton M, Yamada C, Ashburner M, Gelbart WM, Rubin GM, Lewis SE.

Genome Biol. 2002;3(12):RESEARCH0083. Epub 2002 Dec 31. Review.

PMID:
12537572
[PubMed - indexed for MEDLINE]
Free PMC Article
2.
3.

Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome.

Bergman CM, Pfeiffer BD, Rincón-Limas DE, Hoskins RA, Gnirke A, Mungall CJ, Wang AM, Kronmiller B, Pacleb J, Park S, Stapleton M, Wan K, George RA, de Jong PJ, Botas J, Rubin GM, Celniker SE.

Genome Biol. 2002;3(12):RESEARCH0086. Epub 2002 Dec 30.

PMID:
12537575
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

An integrated gene annotation and transcriptional profiling approach towards the full gene content of the Drosophila genome.

Hild M, Beckmann B, Haas SA, Koch B, Solovyev V, Busold C, Fellenberg K, Boutros M, Vingron M, Sauer F, Hoheisel JD, Paro R.

Genome Biol. 2003;5(1):R3. Epub 2003 Dec 22.

PMID:
14709175
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Drosophila melanogaster: a case study of a model genomic sequence and its consequences.

Ashburner M, Bergman CM.

Genome Res. 2005 Dec;15(12):1661-7. Review.

PMID:
16339363
[PubMed - indexed for MEDLINE]
Free Article
6.

In silico identification of new secretory peptide genes in Drosophila melanogaster.

Liu F, Baggerman G, D'Hertog W, Verleyen P, Schoofs L, Wets G.

Mol Cell Proteomics. 2006 Mar;5(3):510-22. Epub 2005 Nov 16.

PMID:
16291998
[PubMed - indexed for MEDLINE]
Free Article
7.

The Drosophila melanogaster genome sequencing and annotation projects: a status report.

Drysdale R.

Brief Funct Genomic Proteomic. 2003 Jul;2(2):128-34. Review.

PMID:
15239934
[PubMed - indexed for MEDLINE]
Free Article
8.

Systematic analysis of human kinase genes: a large number of genes and alternative splicing events result in functional and structural diversity.

Milanesi L, Petrillo M, Sepe L, Boccia A, D'Agostino N, Passamano M, Di Nardo S, Tasco G, Casadio R, Paolella G.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S20.

PMID:
16351747
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Gene discovery using computational and microarray analysis of transcription in the Drosophila melanogaster testis.

Andrews J, Bouffard GG, Cheadle C, Lü J, Becker KG, Oliver B.

Genome Res. 2000 Dec;10(12):2030-43.

PMID:
11116097
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

A computational and experimental approach to validating annotations and gene predictions in the Drosophila melanogaster genome.

Yandell M, Bailey AM, Misra S, Shu S, Wiel C, Evans-Holm M, Celniker SE, Rubin GM.

Proc Natl Acad Sci U S A. 2005 Feb 1;102(5):1566-71. Epub 2005 Jan 24.

PMID:
15668397
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Homology-based annotation yields 1,042 new candidate genes in the Drosophila melanogaster genome.

Gopal S, Schroeder M, Pieper U, Sczyrba A, Aytekin-Kurban G, Bekiranov S, Fajardo JE, Eswar N, Sanchez R, Sali A, Gaasterland T.

Nat Genet. 2001 Mar;27(3):337-40.

PMID:
11242120
[PubMed - indexed for MEDLINE]
12.

The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective.

Kaminker JS, Bergman CM, Kronmiller B, Carlson J, Svirskas R, Patel S, Frise E, Wheeler DA, Lewis SE, Rubin GM, Ashburner M, Celniker SE.

Genome Biol. 2002;3(12):RESEARCH0084. Epub 2002 Dec 23.

PMID:
12537573
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Genome annotation assessment in Drosophila melanogaster.

Reese MG, Hartzell G, Harris NL, Ohler U, Abril JF, Lewis SE.

Genome Res. 2000 Apr;10(4):483-501.

PMID:
10779488
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

The genome sequence of Drosophila melanogaster.

Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, Amanatides PG, Scherer SE, Li PW, Hoskins RA, Galle RF, George RA, Lewis SE, Richards S, Ashburner M, Henderson SN, Sutton GG, Wortman JR, Yandell MD, Zhang Q, Chen LX, Brandon RC, Rogers YH, Blazej RG, Champe M, Pfeiffer BD, Wan KH, Doyle C, Baxter EG, Helt G, Nelson CR, Gabor GL, Abril JF, Agbayani A, An HJ, Andrews-Pfannkoch C, Baldwin D, Ballew RM, Basu A, Baxendale J, Bayraktaroglu L, Beasley EM, Beeson KY, Benos PV, Berman BP, Bhandari D, Bolshakov S, Borkova D, Botchan MR, Bouck J, Brokstein P, Brottier P, Burtis KC, Busam DA, Butler H, Cadieu E, Center A, Chandra I, Cherry JM, Cawley S, Dahlke C, Davenport LB, Davies P, de Pablos B, Delcher A, Deng Z, Mays AD, Dew I, Dietz SM, Dodson K, Doup LE, Downes M, Dugan-Rocha S, Dunkov BC, Dunn P, Durbin KJ, Evangelista CC, Ferraz C, Ferriera S, Fleischmann W, Fosler C, Gabrielian AE, Garg NS, Gelbart WM, Glasser K, Glodek A, Gong F, Gorrell JH, Gu Z, Guan P, Harris M, Harris NL, Harvey D, Heiman TJ, Hernandez JR, Houck J, Hostin D, Houston KA, Howland TJ, Wei MH, Ibegwam C, Jalali M, Kalush F, Karpen GH, Ke Z, Kennison JA, Ketchum KA, Kimmel BE, Kodira CD, Kraft C, Kravitz S, Kulp D, Lai Z, Lasko P, Lei Y, Levitsky AA, Li J, Li Z, Liang Y, Lin X, Liu X, Mattei B, McIntosh TC, McLeod MP, McPherson D, Merkulov G, Milshina NV, Mobarry C, Morris J, Moshrefi A, Mount SM, Moy M, Murphy B, Murphy L, Muzny DM, Nelson DL, Nelson DR, Nelson KA, Nixon K, Nusskern DR, Pacleb JM, Palazzolo M, Pittman GS, Pan S, Pollard J, Puri V, Reese MG, Reinert K, Remington K, Saunders RD, Scheeler F, Shen H, Shue BC, Sidén-Kiamos I, Simpson M, Skupski MP, Smith T, Spier E, Spradling AC, Stapleton M, Strong R, Sun E, Svirskas R, Tector C, Turner R, Venter E, Wang AH, Wang X, Wang ZY, Wassarman DA, Weinstock GM, Weissenbach J, Williams SM, WoodageT, Worley KC, Wu D, Yang S, Yao QA, Ye J, Yeh RF, Zaveri JS, Zhan M, Zhang G, Zhao Q, Zheng L, Zheng XH, Zhong FN, Zhong W, Zhou X, Zhu S, Zhu X, Smith HO, Gibbs RA, Myers EW, Rubin GM, Venter JC.

Science. 2000 Mar 24;287(5461):2185-95.

PMID:
10731132
[PubMed - indexed for MEDLINE]
15.

Genome annotation of Anopheles gambiae using mass spectrometry-derived data.

Kalume DE, Peri S, Reddy R, Zhong J, Okulate M, Kumar N, Pandey A.

BMC Genomics. 2005 Sep 19;6:128.

PMID:
16171517
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura.

Berman BP, Pfeiffer BD, Laverty TR, Salzberg SL, Rubin GM, Eisen MB, Celniker SE.

Genome Biol. 2004;5(9):R61. Epub 2004 Aug 20.

PMID:
15345045
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Computational identification of Drosophila microRNA genes.

Lai EC, Tomancak P, Williams RW, Rubin GM.

Genome Biol. 2003;4(7):R42. Epub 2003 Jun 30.

PMID:
12844358
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Colonization of heterochromatic genes by transposable elements in Drosophila.

Dimitri P, Junakovic N, Arcà B.

Mol Biol Evol. 2003 Apr;20(4):503-12. Epub 2003 Mar 5.

PMID:
12654931
[PubMed - indexed for MEDLINE]
Free Article
19.

Characterization of 954 bovine full-CDS cDNA sequences.

Harhay GP, Sonstegard TS, Keele JW, Heaton MP, Clawson ML, Snelling WM, Wiedmann RT, Van Tassell CP, Smith TP.

BMC Genomics. 2005 Nov 23;6:166.

PMID:
16305752
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Computational annotation of transcription factor binding sites in D. Melanogaster developmental genes.

Narang V, Sung WK, Mittal A.

Genome Inform. 2006;17(2):14-24.

PMID:
17503375
[PubMed - indexed for MEDLINE]

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