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Results: 1 to 20 of 69

1.

Apollo: a sequence annotation editor.

Lewis SE, Searle SM, Harris N, Gibson M, Lyer V, Richter J, Wiel C, Bayraktaroglir L, Birney E, Crosby MA, Kaminker JS, Matthews BB, Prochnik SE, Smithy CD, Tupy JL, Rubin GM, Misra S, Mungall CJ, Clamp ME.

Genome Biol. 2002;3(12):RESEARCH0082. Epub 2002 Dec 23. Review.

PMID:
12537571
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Using Apollo to browse and edit genome annotations.

Misra S, Harris N.

Curr Protoc Bioinformatics. 2006 Jan;Chapter 9:Unit 9.5. doi: 10.1002/0471250953.bi0905s12.

PMID:
18428771
[PubMed - indexed for MEDLINE]
3.

Apollo2Go: a web service adapter for the Apollo genome viewer to enable distributed genome annotation.

Klee K, Ernst R, Spannagl M, Mayer KF.

BMC Bioinformatics. 2007 Aug 30;8:320.

PMID:
17760972
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Apollo: a community resource for genome annotation editing.

Lee E, Harris N, Gibson M, Chetty R, Lewis S.

Bioinformatics. 2009 Jul 15;25(14):1836-7. doi: 10.1093/bioinformatics/btp314. Epub 2009 May 13.

PMID:
19439563
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Semia: semi-automatic interactive graphic editing tool to annotate ambulatory ECG records.

Dorn R, Jager F.

Comput Methods Programs Biomed. 2004 Sep;75(3):235-49.

PMID:
15265622
[PubMed - indexed for MEDLINE]
6.

Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database.

Carver T, Berriman M, Tivey A, Patel C, Böhme U, Barrell BG, Parkhill J, Rajandream MA.

Bioinformatics. 2008 Dec 1;24(23):2672-6. doi: 10.1093/bioinformatics/btn529. Epub 2008 Oct 9.

PMID:
18845581
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

GeneNotes--a novel information management software for biologists.

Hong P, Wong WH.

BMC Bioinformatics. 2005 Feb 1;6:20.

PMID:
15686593
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

CAAT-Box, Contigs-Assembly and Annotation Tool-Box for genome sequencing projects.

Frangeul L, Glaser P, Rusniok C, Buchrieser C, Duchaud E, Dehoux P, Kunst F.

Bioinformatics. 2004 Mar 22;20(5):790-7. Epub 2004 Jan 29.

PMID:
14752000
[PubMed - indexed for MEDLINE]
Free Article
9.

MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes.

Cantarel BL, Korf I, Robb SM, Parra G, Ross E, Moore B, Holt C, Sánchez Alvarado A, Yandell M.

Genome Res. 2008 Jan;18(1):188-96. Epub 2007 Nov 19.

PMID:
18025269
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

An integrated computational pipeline and database to support whole-genome sequence annotation.

Mungall CJ, Misra S, Berman BP, Carlson J, Frise E, Harris N, Marshall B, Shu S, Kaminker JS, Prochnik SE, Smith CD, Smith E, Tupy JL, Wiel C, Rubin GM, Lewis SE.

Genome Biol. 2002;3(12):RESEARCH0081. Epub 2002 Dec 23. Review.

PMID:
12537570
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Processing sequence annotation data using the Lua programming language.

Ueno Y, Arita M, Kumagai T, Asai K.

Genome Inform. 2003;14:154-63.

PMID:
15706530
[PubMed - indexed for MEDLINE]
12.

GeneTools--application for functional annotation and statistical hypothesis testing.

Beisvag V, Jünge FK, Bergum H, Jølsum L, Lydersen S, Günther CC, Ramampiaro H, Langaas M, Sandvik AK, Laegreid A.

BMC Bioinformatics. 2006 Oct 24;7:470.

PMID:
17062145
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Automatic annotation of organellar genomes with DOGMA.

Wyman SK, Jansen RK, Boore JL.

Bioinformatics. 2004 Nov 22;20(17):3252-5. Epub 2004 Jun 4.

PMID:
15180927
[PubMed - indexed for MEDLINE]
Free Article
14.

JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow.

Latorre M, Silva H, Saba J, Guziolowski C, Vizoso P, Martinez V, Maldonado J, Morales A, Caroca R, Cambiazo V, Campos-Vargas R, Gonzalez M, Orellana A, Retamales J, Meisel LA.

BMC Bioinformatics. 2006 Nov 23;7:513.

PMID:
17123449
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

ComPath: comparative enzyme analysis and annotation in pathway/subsystem contexts.

Choi K, Kim S.

BMC Bioinformatics. 2008 Mar 6;9:145. doi: 10.1186/1471-2105-9-145.

PMID:
18325116
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

The otter annotation system.

Searle SM, Gilbert J, Iyer V, Clamp M.

Genome Res. 2004 May;14(5):963-70.

PMID:
15123593
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

ASAP: a resource for annotating, curating, comparing, and disseminating genomic data.

Glasner JD, Rusch M, Liss P, Plunkett G 3rd, Cabot EL, Darling A, Anderson BD, Infield-Harm P, Gilson MC, Perna NT.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D41-5.

PMID:
16381899
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

WILMA-automated annotation of protein sequences.

Prlić A, Domingues FS, Lackner P, Sippl MJ.

Bioinformatics. 2004 Jan 1;20(1):127-8.

PMID:
14693821
[PubMed - indexed for MEDLINE]
Free Article
19.

The Jalview Java alignment editor.

Clamp M, Cuff J, Searle SM, Barton GJ.

Bioinformatics. 2004 Feb 12;20(3):426-7. Epub 2004 Jan 22.

PMID:
14960472
[PubMed - indexed for MEDLINE]
Free Article
20.

Pegasys: software for executing and integrating analyses of biological sequences.

Shah SP, He DY, Sawkins JN, Druce JC, Quon G, Lett D, Zheng GX, Xu T, Ouellette BF.

BMC Bioinformatics. 2004 Apr 19;5:40.

PMID:
15096276
[PubMed - indexed for MEDLINE]
Free PMC Article

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