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Results: 1 to 20 of 116

1.

Bayesian analysis of gene expression levels: statistical quantification of relative mRNA level across multiple strains or treatments.

Townsend JP, Hartl DL.

Genome Biol. 2002;3(12):RESEARCH0071. Epub 2002 Nov 20.

PMID:
12537560
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Exploratory differential gene expression analysis in microarray experiments with no or limited replication.

Loguinov AV, Mian IS, Vulpe CD.

Genome Biol. 2004;5(3):R18. Epub 2004 Mar 1.

PMID:
15003121
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data.

Gao F, Foat BC, Bussemaker HJ.

BMC Bioinformatics. 2004 Mar 18;5:31.

PMID:
15113405
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Bayesian network and nonparametric heteroscedastic regression for nonlinear modeling of genetic network.

Imoto S, Kim S, Goto T, Miyano S, Aburatani S, Tashiro K, Kuhara S.

J Bioinform Comput Biol. 2003 Jul;1(2):231-52.

PMID:
15290771
[PubMed - indexed for MEDLINE]
5.

Intensity-based hierarchical Bayes method improves testing for differentially expressed genes in microarray experiments.

Sartor MA, Tomlinson CR, Wesselkamper SC, Sivaganesan S, Leikauf GD, Medvedovic M.

BMC Bioinformatics. 2006 Dec 19;7:538.

PMID:
17177995
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

A novel plasmid-based microarray screen identifies suppressors of rrp6Delta in Saccharomyces cerevisiae.

Abruzzi K, Denome S, Olsen JR, Assenholt J, Haaning LL, Jensen TH, Rosbash M.

Mol Cell Biol. 2007 Feb;27(3):1044-55. Epub 2006 Nov 13.

PMID:
17101774
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Transcriptome profiling of a Saccharomyces cerevisiae mutant with a constitutively activated Ras/cAMP pathway.

Jones DL, Petty J, Hoyle DC, Hayes A, Ragni E, Popolo L, Oliver SG, Stateva LI.

Physiol Genomics. 2003 Dec 16;16(1):107-18.

PMID:
14570984
[PubMed - indexed for MEDLINE]
8.

Bayesian infinite mixture model based clustering of gene expression profiles.

Medvedovic M, Sivaganesan S.

Bioinformatics. 2002 Sep;18(9):1194-206.

PMID:
12217911
[PubMed - indexed for MEDLINE]
Free Article
9.

Genetic dissection of transcriptional regulation in budding yeast.

Brem RB, Yvert G, Clinton R, Kruglyak L.

Science. 2002 Apr 26;296(5568):752-5. Epub 2002 Mar 28.

PMID:
11923494
[PubMed - indexed for MEDLINE]
Free Article
10.

Protein pathway and complex clustering of correlated mRNA and protein expression analyses in Saccharomyces cerevisiae.

Washburn MP, Koller A, Oshiro G, Ulaszek RR, Plouffe D, Deciu C, Winzeler E, Yates JR 3rd.

Proc Natl Acad Sci U S A. 2003 Mar 18;100(6):3107-12. Epub 2003 Mar 7.

PMID:
12626741
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Bayesian hierarchical error model for analysis of gene expression data.

Cho H, Lee JK.

Bioinformatics. 2004 Sep 1;20(13):2016-25. Epub 2004 Mar 25.

PMID:
15044230
[PubMed - indexed for MEDLINE]
Free Article
12.

Systematic approaches for incorporating control spots and data quality information to improve normalization of cDNA microarray data.

Wang D, Zhang CH, Soares MB, Huang J.

J Biopharm Stat. 2007;17(3):415-31.

PMID:
17479391
[PubMed - indexed for MEDLINE]
13.

Population genetic variation in gene expression is associated with phenotypic variation in Saccharomyces cerevisiae.

Fay JC, McCullough HL, Sniegowski PD, Eisen MB.

Genome Biol. 2004;5(4):R26. Epub 2004 Mar 24.

PMID:
15059259
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Differential analysis of DNA microarray gene expression data.

Hatfield GW, Hung SP, Baldi P.

Mol Microbiol. 2003 Feb;47(4):871-7. Review.

PMID:
12581345
[PubMed - indexed for MEDLINE]
15.

Bayesian models for pooling microarray studies with multiple sources of replications.

Conlon EM, Song JJ, Liu JS.

BMC Bioinformatics. 2006 May 5;7:247.

PMID:
16677390
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Mechanisms of copper toxicity in Saccharomyces cerevisiae determined by microarray analysis.

Yasokawa D, Murata S, Kitagawa E, Iwahashi Y, Nakagawa R, Hashido T, Iwahashi H.

Environ Toxicol. 2008 Oct;23(5):599-606. doi: 10.1002/tox.20406.

PMID:
18528910
[PubMed - indexed for MEDLINE]
18.

Analysis of adaptation to high ethanol concentration in Saccharomyces cerevisiae using DNA microarray.

Dinh TN, Nagahisa K, Yoshikawa K, Hirasawa T, Furusawa C, Shimizu H.

Bioprocess Biosyst Eng. 2009 Aug;32(5):681-8. doi: 10.1007/s00449-008-0292-7. Epub 2009 Jan 6.

PMID:
19125301
[PubMed - indexed for MEDLINE]
19.

Bayesian detection of periodic mRNA time profiles without use of training examples.

Andersson CR, Isaksson A, Gustafsson MG.

BMC Bioinformatics. 2006 Feb 9;7:63.

PMID:
16469110
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Global phenotypic analysis and transcriptional profiling defines the weak acid stress response regulon in Saccharomyces cerevisiae.

Schüller C, Mamnun YM, Mollapour M, Krapf G, Schuster M, Bauer BE, Piper PW, Kuchler K.

Mol Biol Cell. 2004 Feb;15(2):706-20. Epub 2003 Nov 14.

PMID:
14617816
[PubMed - indexed for MEDLINE]
Free PMC Article

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