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Results: 1 to 20 of 81

1.

BioArray Software Environment (BASE): a platform for comprehensive management and analysis of microarray data.

Saal LH, Troein C, Vallon-Christersson J, Gruvberger S, Borg A, Peterson C.

Genome Biol. 2002 Jul 15;3(8):SOFTWARE0003. Epub 2002 Jul 15.

PMID:
12186655
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

An introduction to BioArray Software Environment.

Troein C, Vallon-Christersson J, Saal LH.

Methods Enzymol. 2006;411:99-119. Review.

PMID:
16939788
[PubMed - indexed for MEDLINE]
3.

GeneXplorer: an interactive web application for microarray data visualization and analysis.

Rees CA, Demeter J, Matese JC, Botstein D, Sherlock G.

BMC Bioinformatics. 2004 Oct 1;5:141.

PMID:
15458579
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

EzArray: a web-based highly automated Affymetrix expression array data management and analysis system.

Zhu Y, Zhu Y, Xu W.

BMC Bioinformatics. 2008 Jan 24;9:46. doi: 10.1186/1471-2105-9-46.

PMID:
18218103
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Open source software for the analysis of microarray data.

Dudoit S, Gentleman RC, Quackenbush J.

Biotechniques. 2003 Mar;Suppl:45-51. Review.

PMID:
12664684
[PubMed - indexed for MEDLINE]
6.

Pipeline for macro- and microarray analyses.

Vicentini R, Menossi M.

Braz J Med Biol Res. 2007 May;40(5):615-9.

PMID:
17464422
[PubMed - indexed for MEDLINE]
Free Article
7.

SeeGH--a software tool for visualization of whole genome array comparative genomic hybridization data.

Chi B, DeLeeuw RJ, Coe BP, MacAulay C, Lam WL.

BMC Bioinformatics. 2004 Feb 9;5:13.

PMID:
15040819
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

BASE--2nd generation software for microarray data management and analysis.

Vallon-Christersson J, Nordborg N, Svensson M, Häkkinen J.

BMC Bioinformatics. 2009 Oct 12;10:330. doi: 10.1186/1471-2105-10-330.

PMID:
19822003
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

EMMA 2--a MAGE-compliant system for the collaborative analysis and integration of microarray data.

Dondrup M, Albaum SP, Griebel T, Henckel K, Jünemann S, Kahlke T, Kleindt CK, Küster H, Linke B, Mertens D, Mittard-Runte V, Neuweger H, Runte KJ, Tauch A, Tille F, Pühler A, Goesmann A.

BMC Bioinformatics. 2009 Feb 6;10:50. doi: 10.1186/1471-2105-10-50.

PMID:
19200358
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Gene expression data preprocessing.

Herrero J, Díaz-Uriarte R, Dopazo J.

Bioinformatics. 2003 Mar 22;19(5):655-6.

PMID:
12651726
[PubMed - indexed for MEDLINE]
Free Article
11.

An XML message broker framework for exchange and integration of microarray data.

Tjandra D, Wong S, Shen W, Pulliam B, Yu E, Esserman L.

Bioinformatics. 2003 Sep 22;19(14):1844-5.

PMID:
14512357
[PubMed - indexed for MEDLINE]
Free Article
12.

MADGE: scalable distributed data management software for cDNA microarrays.

McIndoe RA, Lanzen A, Hurtz K.

Bioinformatics. 2003 Jan;19(1):87-9.

PMID:
12499297
[PubMed - indexed for MEDLINE]
Free Article
13.

CellMontage: similar expression profile search server.

Fujibuchi W, Kiseleva L, Taniguchi T, Harada H, Horton P.

Bioinformatics. 2007 Nov 15;23(22):3103-4. Epub 2007 Sep 25. Erratum in: Bioinformatics. 2008 Jun;24(9):1223.

PMID:
17895274
[PubMed - indexed for MEDLINE]
Free Article
14.

SBEAMS-Microarray: database software supporting genomic expression analyses for systems biology.

Marzolf B, Deutsch EW, Moss P, Campbell D, Johnson MH, Galitski T.

BMC Bioinformatics. 2006 Jun 6;7:286.

PMID:
16756676
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

The genopolis microarray database.

Splendiani A, Brandizi M, Even G, Beretta O, Pavelka N, Pelizzola M, Mayhaus M, Foti M, Mauri G, Ricciardi-Castagnoli P.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S21.

PMID:
17430566
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

A web services choreography scenario for interoperating bioinformatics applications.

de Knikker R, Guo Y, Li JL, Kwan AK, Yip KY, Cheung DW, Cheung KH.

BMC Bioinformatics. 2004 Mar 10;5:25.

PMID:
15113410
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

CGO: utilizing and integrating gene expression microarray data in clinical research and data management.

Bumm K, Zheng M, Bailey C, Zhan F, Chiriva-Internati M, Eddlemon P, Terry J, Barlogie B, Shaughnessy JD Jr.

Bioinformatics. 2002 Feb;18(2):327-8.

PMID:
11847084
[PubMed - indexed for MEDLINE]
Free Article
18.

Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package 'annotationTools'.

Kuhn A, Luthi-Carter R, Delorenzi M.

BMC Bioinformatics. 2008 Jan 17;9:26. doi: 10.1186/1471-2105-9-26.

PMID:
18201381
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

MIMAS: an innovative tool for network-based high density oligonucleotide microarray data management and annotation.

Hermida L, Schaad O, Demougin P, Descombes P, Primig M.

BMC Bioinformatics. 2006 Apr 5;7:190.

PMID:
16597336
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

TMABoost: an integrated system for comprehensive management of tissue microarray data.

Demichelis F, Sboner A, Barbareschi M, Dell'Anna R.

IEEE Trans Inf Technol Biomed. 2006 Jan;10(1):19-27.

PMID:
16445246
[PubMed - indexed for MEDLINE]

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