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Results: 1 to 20 of 156

1.

A prediction-based resampling method for estimating the number of clusters in a dataset.

Dudoit S, Fridlyand J.

Genome Biol. 2002 Jun 25;3(7):RESEARCH0036. Epub 2002 Jun 25.

PMID:
12184810
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Bagging to improve the accuracy of a clustering procedure.

Dudoit S, Fridlyand J.

Bioinformatics. 2003 Jun 12;19(9):1090-9.

PMID:
12801869
[PubMed - indexed for MEDLINE]
Free Article
3.

Estimating dataset size requirements for classifying DNA microarray data.

Mukherjee S, Tamayo P, Rogers S, Rifkin R, Engle A, Campbell C, Golub TR, Mesirov JP.

J Comput Biol. 2003;10(2):119-42.

PMID:
12804087
[PubMed - indexed for MEDLINE]
4.

Simultaneous gene clustering and subset selection for sample classification via MDL.

Jörnsten R, Yu B.

Bioinformatics. 2003 Jun 12;19(9):1100-9.

PMID:
12801870
[PubMed - indexed for MEDLINE]
Free Article
5.

Multi-class clustering of cancer subtypes through SVM based ensemble of pareto-optimal solutions for gene marker identification.

Mukhopadhyay A, Bandyopadhyay S, Maulik U.

PLoS One. 2010 Nov 12;5(11):e13803. doi: 10.1371/journal.pone.0013803.

PMID:
21103052
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

A stable iterative method for refining discriminative gene clusters.

Xu M, Zhu M, Zhang L.

BMC Genomics. 2008 Sep 16;9 Suppl 2:S18. doi: 10.1186/1471-2164-9-S2-S18.

PMID:
18831783
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Reliable classification of two-class cancer data using evolutionary algorithms.

Deb K, Raji Reddy A.

Biosystems. 2003 Nov;72(1-2):111-29.

PMID:
14642662
[PubMed - indexed for MEDLINE]
8.

Tumor classification ranking from microarray data.

Hewett R, Kijsanayothin P.

BMC Genomics. 2008 Sep 16;9 Suppl 2:S21. doi: 10.1186/1471-2164-9-S2-S21.

PMID:
18831787
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

New algorithms for multi-class cancer diagnosis using tumor gene expression signatures.

Bagirov AM, Ferguson B, Ivkovic S, Saunders G, Yearwood J.

Bioinformatics. 2003 Sep 22;19(14):1800-7.

PMID:
14512351
[PubMed - indexed for MEDLINE]
Free Article
10.

SamCluster: an integrated scheme for automatic discovery of sample classes using gene expression profile.

Li W, Fan M, Xiong M.

Bioinformatics. 2003 May 1;19(7):811-7.

PMID:
12724290
[PubMed - indexed for MEDLINE]
Free Article
11.

Reliable gene signatures for microarray classification: assessment of stability and performance.

Davis CA, Gerick F, Hintermair V, Friedel CC, Fundel K, Küffner R, Zimmer R.

Bioinformatics. 2006 Oct 1;22(19):2356-63. Epub 2006 Jul 31.

PMID:
16882647
[PubMed - indexed for MEDLINE]
Free Article
12.

New resampling method for evaluating stability of clusters.

Gana Dresen IM, Boes T, Huesing J, Neuhaeuser M, Joeckel KH.

BMC Bioinformatics. 2008 Jan 24;9:42. doi: 10.1186/1471-2105-9-42.

PMID:
18218074
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Independent component analysis-based penalized discriminant method for tumor classification using gene expression data.

Huang DS, Zheng CH.

Bioinformatics. 2006 Aug 1;22(15):1855-62. Epub 2006 May 18.

PMID:
16709589
[PubMed - indexed for MEDLINE]
Free Article
14.

NIFTI: an evolutionary approach for finding number of clusters in microarray data.

Jonnalagadda S, Srinivasan R.

BMC Bioinformatics. 2009 Jan 30;10:40. doi: 10.1186/1471-2105-10-40.

PMID:
19178750
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Computational cluster validation for microarray data analysis: experimental assessment of Clest, Consensus Clustering, Figure of Merit, Gap Statistics and Model Explorer.

Giancarlo R, Scaturro D, Utro F.

BMC Bioinformatics. 2008 Oct 29;9:462. doi: 10.1186/1471-2105-9-462.

PMID:
18959783
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Biomarker identification and cancer classification based on microarray data using Laplace naive Bayes model with mean shrinkage.

Wu MY, Dai DQ, Shi Y, Yan H, Zhang XF.

IEEE/ACM Trans Comput Biol Bioinform. 2012 Nov-Dec;9(6):1649-62.

PMID:
22868679
[PubMed - indexed for MEDLINE]
17.

Combining multiple hypothesis testing and affinity propagation clustering leads to accurate, robust and sample size independent classification on gene expression data.

Sakellariou A, Sanoudou D, Spyrou G.

BMC Bioinformatics. 2012 Oct 17;13:270. doi: 10.1186/1471-2105-13-270.

PMID:
23075381
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Robust multi-scale clustering of large DNA microarray datasets with the consensus algorithm.

Grotkjaer T, Winther O, Regenberg B, Nielsen J, Hansen LK.

Bioinformatics. 2006 Jan 1;22(1):58-67. Epub 2005 Oct 27.

PMID:
16257984
[PubMed - indexed for MEDLINE]
Free Article
19.

Cluster stability scores for microarray data in cancer studies.

Smolkin M, Ghosh D.

BMC Bioinformatics. 2003 Sep 6;4:36. Epub 2003 Sep 6.

PMID:
12959646
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Estimating number of clusters based on a general similarity matrix with application to microarray data.

Fallah S, Tritchler D, Beyene J.

Stat Appl Genet Mol Biol. 2008;7(1):Article24. doi: 10.2202/1544-6115.1261. Epub 2008 Aug 2.

PMID:
18764773
[PubMed - indexed for MEDLINE]

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