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Results: 1 to 20 of 98

1.

Empirical characterization of the expression ratio noise structure in high-density oligonucleotide arrays.

Naef F, Hacker CR, Patil N, Magnasco M.

Genome Biol. 2002;3(4):RESEARCH0018. Epub 2002 Mar 22.

PMID:
11983059
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Characterization of the expression ratio noise structure in high-density oligonucleotide arrays.

Naef F, Hacker CR, Patil N, Magnasco M.

Genome Biol. 2002;3(1):PREPRINT0001. Epub 2001 Dec 7.

PMID:
11806820
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Statistical analysis of high-density oligonucleotide arrays: a multiplicative noise model.

Sásik R, Calvo E, Corbeil J.

Bioinformatics. 2002 Dec;18(12):1633-40.

PMID:
12490448
[PubMed - indexed for MEDLINE]
Free Article
4.

Exploration, normalization, and summaries of high density oligonucleotide array probe level data.

Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Scherf U, Speed TP.

Biostatistics. 2003 Apr;4(2):249-64.

PMID:
12925520
[PubMed - indexed for MEDLINE]
Free Article
5.

Noise sampling method: an ANOVA approach allowing robust selection of differentially regulated genes measured by DNA microarrays.

Draghici S, Kulaeva O, Hoff B, Petrov A, Shams S, Tainsky MA.

Bioinformatics. 2003 Jul 22;19(11):1348-59.

PMID:
12874046
[PubMed - indexed for MEDLINE]
Free Article
6.

Model-based analysis of oligonucleotide arrays: model validation, design issues and standard error application.

Li C, Hung Wong W.

Genome Biol. 2001;2(8):RESEARCH0032. Epub 2001 Aug 3.

PMID:
11532216
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Characterization of mismatch and high-signal intensity probes associated with Affymetrix genechips.

Wang Y, Miao ZH, Pommier Y, Kawasaki ES, Player A.

Bioinformatics. 2007 Aug 15;23(16):2088-95. Epub 2007 Jun 6.

PMID:
17553856
[PubMed - indexed for MEDLINE]
Free Article
8.

Theoretical and experimental comparisons of gene expression indexes for oligonucleotide arrays.

Lemon WJ, Palatini JJ, Krahe R, Wright FA.

Bioinformatics. 2002 Nov;18(11):1470-6.

PMID:
12424118
[PubMed - indexed for MEDLINE]
Free Article
9.

Stochastic models inspired by hybridization theory for short oligonucleotide arrays.

Wu Z, Irizarry RA.

J Comput Biol. 2005 Jul-Aug;12(6):882-93.

PMID:
16108723
[PubMed - indexed for MEDLINE]
10.

A statistical method for flagging weak spots improves normalization and ratio estimates in microarrays.

Yang MC, Ruan QG, Yang JJ, Eckenrode S, Wu S, McIndoe RA, She JX.

Physiol Genomics. 2001 Oct 10;7(1):45-53.

PMID:
11595791
[PubMed - indexed for MEDLINE]
11.

A simple optimization can improve the performance of single feature polymorphism detection by Affymetrix expression arrays.

Horiuchi Y, Harushima Y, Fujisawa H, Mochizuki T, Kawakita M, Sakaguchi T, Kurata N.

BMC Genomics. 2010 May 20;11:315. doi: 10.1186/1471-2164-11-315.

PMID:
20482895
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Washing scaling of GeneChip microarray expression.

Binder H, Krohn K, Burden CJ.

BMC Bioinformatics. 2010 May 28;11:291. doi: 10.1186/1471-2105-11-291.

PMID:
20509934
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Evaluation of normalization procedures for oligonucleotide array data based on spiked cRNA controls.

Hill AA, Brown EL, Whitley MZ, Tucker-Kellogg G, Hunter CP, Slonim DK.

Genome Biol. 2001;2(12):RESEARCH0055. Epub 2001 Nov 21.

PMID:
11790258
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Contrast normalization of oligonucleotide arrays.

Astrand M.

J Comput Biol. 2003;10(1):95-102.

PMID:
12676053
[PubMed - indexed for MEDLINE]
15.

Effect of local background intensities in the normalization of cDNA microarray data with a skewed expression profiles.

Kim JH, Shin DM, Lee YS.

Exp Mol Med. 2002 Jul 31;34(3):224-32.

PMID:
12216114
[PubMed - indexed for MEDLINE]
Free Article
16.

Effect of RNA quality on transcript intensity levels in microarray analysis of human post-mortem brain tissues.

Popova T, Mennerich D, Weith A, Quast K.

BMC Genomics. 2008 Feb 25;9:91. doi: 10.1186/1471-2164-9-91.

PMID:
18298816
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Interactively optimizing signal-to-noise ratios in expression profiling: project-specific algorithm selection and detection p-value weighting in Affymetrix microarrays.

Seo J, Bakay M, Chen YW, Hilmer S, Shneiderman B, Hoffman EP.

Bioinformatics. 2004 Nov 1;20(16):2534-44. Epub 2004 Apr 29.

PMID:
15117752
[PubMed - indexed for MEDLINE]
Free Article
18.

Expression profiling using affymetrix genechip probe arrays.

Schinke-Braun M, Couget JA.

Methods Mol Biol. 2007;366:13-40.

PMID:
17568117
[PubMed - indexed for MEDLINE]
19.

Robust estimators for expression analysis.

Hubbell E, Liu WM, Mei R.

Bioinformatics. 2002 Dec;18(12):1585-92.

PMID:
12490442
[PubMed - indexed for MEDLINE]
Free Article
20.

Evaluation of methods for oligonucleotide array data via quantitative real-time PCR.

Qin LX, Beyer RP, Hudson FN, Linford NJ, Morris DE, Kerr KF.

BMC Bioinformatics. 2006 Jan 17;7:23.

PMID:
16417622
[PubMed - indexed for MEDLINE]
Free PMC Article

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