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Items: 1 to 20 of 50

1.

Correspondence of Drosophila polycomb group proteins with broad H3K27me3 silent domains.

Jung YL, Kang H, Park PJ, Kuroda MI.

Fly (Austin). 2015;9(4):178-82. doi: 10.1080/19336934.2016.1151988. No abstract available.

PMID:
26940990
2.

Streamlined discovery of cross-linked chromatin complexes and associated histone modifications by mass spectrometry.

Zee BM, Alekseyenko AA, McElroy KA, Kuroda MI.

Proc Natl Acad Sci U S A. 2016 Feb 16;113(7):1784-9. doi: 10.1073/pnas.1522750113. Epub 2016 Feb 1.

3.

The oncogenic BRD4-NUT chromatin regulator drives aberrant transcription within large topological domains.

Alekseyenko AA, Walsh EM, Wang X, Grayson AR, Hsi PT, Kharchenko PV, Kuroda MI, French CA.

Genes Dev. 2015 Jul 15;29(14):1507-23. doi: 10.1101/gad.267583.115.

4.

Sex comb on midleg (Scm) is a functional link between PcG-repressive complexes in Drosophila.

Kang H, McElroy KA, Jung YL, Alekseyenko AA, Zee BM, Park PJ, Kuroda MI.

Genes Dev. 2015 Jun 1;29(11):1136-50. doi: 10.1101/gad.260562.115.

5.

Dosage compensation in Drosophila.

Lucchesi JC, Kuroda MI.

Cold Spring Harb Perspect Biol. 2015 May 1;7(5). pii: a019398. doi: 10.1101/cshperspect.a019398. Review.

PMID:
25934013
6.

BioTAP-XL: Cross-linking/Tandem Affinity Purification to Study DNA Targets, RNA, and Protein Components of Chromatin-Associated Complexes.

Alekseyenko AA, McElroy KA, Kang H, Zee BM, Kharchenko PV, Kuroda MI.

Curr Protoc Mol Biol. 2015 Jan 5;109:21.30.1-32. doi: 10.1002/0471142727.mb2130s109.

7.

Comparative analysis of metazoan chromatin organization.

Ho JW, Jung YL, Liu T, Alver BH, Lee S, Ikegami K, Sohn KA, Minoda A, Tolstorukov MY, Appert A, Parker SC, Gu T, Kundaje A, Riddle NC, Bishop E, Egelhofer TA, Hu SS, Alekseyenko AA, Rechtsteiner A, Asker D, Belsky JA, Bowman SK, Chen QB, Chen RA, Day DS, Dong Y, Dose AC, Duan X, Epstein CB, Ercan S, Feingold EA, Ferrari F, Garrigues JM, Gehlenborg N, Good PJ, Haseley P, He D, Herrmann M, Hoffman MM, Jeffers TE, Kharchenko PV, Kolasinska-Zwierz P, Kotwaliwale CV, Kumar N, Langley SA, Larschan EN, Latorre I, Libbrecht MW, Lin X, Park R, Pazin MJ, Pham HN, Plachetka A, Qin B, Schwartz YB, Shoresh N, Stempor P, Vielle A, Wang C, Whittle CM, Xue H, Kingston RE, Kim JH, Bernstein BE, Dernburg AF, Pirrotta V, Kuroda MI, Noble WS, Tullius TD, Kellis M, MacAlpine DM, Strome S, Elgin SC, Liu XS, Lieb JD, Ahringer J, Karpen GH, Park PJ.

Nature. 2014 Aug 28;512(7515):449-52. doi: 10.1038/nature13415.

8.

Heterochromatin-associated interactions of Drosophila HP1a with dADD1, HIPP1, and repetitive RNAs.

Alekseyenko AA, Gorchakov AA, Zee BM, Fuchs SM, Kharchenko PV, Kuroda MI.

Genes Dev. 2014 Jul 1;28(13):1445-60. doi: 10.1101/gad.241950.114.

9.

Are we there yet? Initial targeting of the Male-Specific Lethal and Polycomb group chromatin complexes in Drosophila.

McElroy KA, Kang H, Kuroda MI.

Open Biol. 2014 Mar 26;4:140006. doi: 10.1098/rsob.140006. Review.

10.

Impact of sequencing depth in ChIP-seq experiments.

Jung YL, Luquette LJ, Ho JW, Ferrari F, Tolstorukov M, Minoda A, Issner R, Epstein CB, Karpen GH, Kuroda MI, Park PJ.

Nucleic Acids Res. 2014 May;42(9):e74. doi: 10.1093/nar/gku178. Epub 2014 Mar 5.

11.

Reciprocal interactions of human C10orf12 and C17orf96 with PRC2 revealed by BioTAP-XL cross-linking and affinity purification.

Alekseyenko AA, Gorchakov AA, Kharchenko PV, Kuroda MI.

Proc Natl Acad Sci U S A. 2014 Feb 18;111(7):2488-93. doi: 10.1073/pnas.1400648111. Epub 2014 Feb 3.

12.

Transcriptional control of a whole chromosome: emerging models for dosage compensation.

Ferrari F, Alekseyenko AA, Park PJ, Kuroda MI.

Nat Struct Mol Biol. 2014 Feb;21(2):118-25. doi: 10.1038/nsmb.2763. Epub 2014 Feb 5. Review.

13.

"Jump start and gain" model for dosage compensation in Drosophila based on direct sequencing of nascent transcripts.

Ferrari F, Plachetka A, Alekseyenko AA, Jung YL, Ozsolak F, Kharchenko PV, Park PJ, Kuroda MI.

Cell Rep. 2013 Nov 14;5(3):629-36. doi: 10.1016/j.celrep.2013.09.037. Epub 2013 Oct 31. Erratum in: Cell Rep. 2013 Nov 27;5(4):1157.

14.

Conservation and de novo acquisition of dosage compensation on newly evolved sex chromosomes in Drosophila.

Alekseyenko AA, Ellison CE, Gorchakov AA, Zhou Q, Kaiser VB, Toda N, Walton Z, Peng S, Park PJ, Bachtrog D, Kuroda MI.

Genes Dev. 2013 Apr 15;27(8):853-8. doi: 10.1101/gad.215426.113.

15.

Chromatin proteins captured by ChIP-mass spectrometry are linked to dosage compensation in Drosophila.

Wang CI, Alekseyenko AA, LeRoy G, Elia AE, Gorchakov AA, Britton LM, Elledge SJ, Kharchenko PV, Garcia BA, Kuroda MI.

Nat Struct Mol Biol. 2013 Feb;20(2):202-9. doi: 10.1038/nsmb.2477. Epub 2013 Jan 6.

16.

Enrichment of HP1a on Drosophila chromosome 4 genes creates an alternate chromatin structure critical for regulation in this heterochromatic domain.

Riddle NC, Jung YL, Gu T, Alekseyenko AA, Asker D, Gui H, Kharchenko PV, Minoda A, Plachetka A, Schwartz YB, Tolstorukov MY, Kuroda MI, Pirrotta V, Karpen GH, Park PJ, Elgin SC.

PLoS Genet. 2012 Sep;8(9):e1002954. doi: 10.1371/journal.pgen.1002954. Epub 2012 Sep 20.

17.

A genome-wide screen identifies genes that affect somatic homolog pairing in Drosophila.

Bateman JR, Larschan E, D'Souza R, Marshall LS, Dempsey KE, Johnson JE, Mellone BG, Kuroda MI.

G3 (Bethesda). 2012 Jul;2(7):731-40. doi: 10.1534/g3.112.002840. Epub 2012 Jul 1.

18.

Identification of chromatin-associated regulators of MSL complex targeting in Drosophila dosage compensation.

Larschan E, Soruco MM, Lee OK, Peng S, Bishop E, Chery J, Goebel K, Feng J, Park PJ, Kuroda MI.

PLoS Genet. 2012;8(7):e1002830. doi: 10.1371/journal.pgen.1002830. Epub 2012 Jul 26.

19.

Nature and function of insulator protein binding sites in the Drosophila genome.

Schwartz YB, Linder-Basso D, Kharchenko PV, Tolstorukov MY, Kim M, Li HB, Gorchakov AA, Minoda A, Shanower G, Alekseyenko AA, Riddle NC, Jung YL, Gu T, Plachetka A, Elgin SC, Kuroda MI, Park PJ, Savitsky M, Karpen GH, Pirrotta V.

Genome Res. 2012 Nov;22(11):2188-98. doi: 10.1101/gr.138156.112. Epub 2012 Jul 5. Erratum in: Genome Res. 2013 Feb;23(2):409.

20.

Sequence-specific targeting of dosage compensation in Drosophila favors an active chromatin context.

Alekseyenko AA, Ho JW, Peng S, Gelbart M, Tolstorukov MY, Plachetka A, Kharchenko PV, Jung YL, Gorchakov AA, Larschan E, Gu T, Minoda A, Riddle NC, Schwartz YB, Elgin SC, Karpen GH, Pirrotta V, Kuroda MI, Park PJ.

PLoS Genet. 2012;8(4):e1002646. doi: 10.1371/journal.pgen.1002646. Epub 2012 Apr 26. Erratum in: PLoS Genet. 2014 Jan;10(1). doi: 10.1371/annotation/39c76721-c8e1-4d42-ae6b-33063ce207d2.

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