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References for PMC Articles for PubMed (Select 23441196)


Adaptation and modification of three CRISPR loci in two closely related cyanobacteria.

Hein S, Scholz I, Voß B, Hess WR.

RNA Biol. 2013 May;10(5):852-64. doi: 10.4161/rna.24160. Epub 2013 Mar 27.


Microevolution in cyanobacteria: re-sequencing a motile substrain of Synechocystis sp. PCC 6803.

Trautmann D, Voss B, Wilde A, Al-Babili S, Hess WR.

DNA Res. 2012 Dec;19(6):435-48. doi: 10.1093/dnares/dss024. Epub 2012 Oct 15.


CRISPR transcript processing: a mechanism for generating a large number of small interfering RNAs.

Djordjevic M, Djordjevic M, Severinov K.

Biol Direct. 2012 Jul 31;7:24. doi: 10.1186/1745-6150-7-24.


Csy4 relies on an unusual catalytic dyad to position and cleave CRISPR RNA.

Haurwitz RE, Sternberg SH, Doudna JA.

EMBO J. 2012 Jun 13;31(12):2824-32. doi: 10.1038/emboj.2012.107. Epub 2012 Apr 20.


Structure of the Cmr2 subunit of the CRISPR-Cas RNA silencing complex.

Cocozaki AI, Ramia NF, Shao Y, Hale CR, Terns RM, Terns MP, Li H.

Structure. 2012 Mar 7;20(3):545-53. doi: 10.1016/j.str.2012.01.018.


Global or local? Predicting secondary structure and accessibility in mRNAs.

Lange SJ, Maticzka D, Möhl M, Gagnon JN, Brown CM, Backofen R.

Nucleic Acids Res. 2012 Jul;40(12):5215-26. doi: 10.1093/nar/gks181. Epub 2012 Feb 28.


A genome-wide view of the expression and processing patterns of Thermus thermophilus HB8 CRISPR RNAs.

Juranek S, Eban T, Altuvia Y, Brown M, Morozov P, Tuschl T, Margalit H.

RNA. 2012 Apr;18(4):783-94. doi: 10.1261/rna.031468.111. Epub 2012 Feb 21.


RNA-guided genetic silencing systems in bacteria and archaea.

Wiedenheft B, Sternberg SH, Doudna JA.

Nature. 2012 Feb 15;482(7385):331-8. doi: 10.1038/nature10886. Review.


Essential features and rational design of CRISPR RNAs that function with the Cas RAMP module complex to cleave RNAs.

Hale CR, Majumdar S, Elmore J, Pfister N, Compton M, Olson S, Resch AM, Glover CV 3rd, Graveley BR, Terns RM, Terns MP.

Mol Cell. 2012 Feb 10;45(3):292-302. doi: 10.1016/j.molcel.2011.10.023. Epub 2012 Jan 5.


Structure and mechanism of the CMR complex for CRISPR-mediated antiviral immunity.

Zhang J, Rouillon C, Kerou M, Reeks J, Brugger K, Graham S, Reimann J, Cannone G, Liu H, Albers SV, Naismith JH, Spagnolo L, White MF.

Mol Cell. 2012 Feb 10;45(3):303-13. doi: 10.1016/j.molcel.2011.12.013. Epub 2012 Jan 5.


CRISPR loci reveal networks of gene exchange in archaea.

Brodt A, Lurie-Weinberger MN, Gophna U.

Biol Direct. 2011 Dec 21;6(1):65. doi: 10.1186/1745-6150-6-65.


Nature and intensity of selection pressure on CRISPR-associated genes.

Takeuchi N, Wolf YI, Makarova KS, Koonin EV.

J Bacteriol. 2012 Mar;194(5):1216-25. doi: 10.1128/JB.06521-11. Epub 2011 Dec 16.


Mature clustered, regularly interspaced, short palindromic repeats RNA (crRNA) length is measured by a ruler mechanism anchored at the precursor processing site.

Hatoum-Aslan A, Maniv I, Marraffini LA.

Proc Natl Acad Sci U S A. 2011 Dec 27;108(52):21218-22. doi: 10.1073/pnas.1112832108. Epub 2011 Dec 12.


Defense islands in bacterial and archaeal genomes and prediction of novel defense systems.

Makarova KS, Wolf YI, Snir S, Koonin EV.

J Bacteriol. 2011 Nov;193(21):6039-56. doi: 10.1128/JB.05535-11. Epub 2011 Sep 9.


Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems.

Makarova KS, Aravind L, Wolf YI, Koonin EV.

Biol Direct. 2011 Jul 14;6:38. doi: 10.1186/1745-6150-6-38.


Recognition and maturation of effector RNAs in a CRISPR interference pathway.

Gesner EM, Schellenberg MJ, Garside EL, George MM, Macmillan AM.

Nat Struct Mol Biol. 2011 Jun;18(6):688-92. doi: 10.1038/nsmb.2042. Epub 2011 May 15.


An RNA-induced conformational change required for CRISPR RNA cleavage by the endoribonuclease Cse3.

Sashital DG, Jinek M, Doudna JA.

Nat Struct Mol Biol. 2011 Jun;18(6):680-7. doi: 10.1038/nsmb.2043. Epub 2011 May 15.


Evolution and classification of the CRISPR-Cas systems.

Makarova KS, Haft DH, Barrangou R, Brouns SJ, Charpentier E, Horvath P, Moineau S, Mojica FJ, Wolf YI, Yakunin AF, van der Oost J, Koonin EV.

Nat Rev Microbiol. 2011 Jun;9(6):467-77. doi: 10.1038/nrmicro2577. Epub 2011 May 9.


CRISPR-based adaptive immune systems.

Terns MP, Terns RM.

Curr Opin Microbiol. 2011 Jun;14(3):321-7. doi: 10.1016/j.mib.2011.03.005. Epub 2011 Apr 29. Review.


Csy4 is responsible for CRISPR RNA processing in Pectobacterium atrosepticum.

Przybilski R, Richter C, Gristwood T, Clulow JS, Vercoe RB, Fineran PC.

RNA Biol. 2011 May-Jun;8(3):517-28. Epub 2011 May 1.

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