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Results: 1 to 20 of 28

References for PMC Articles for PubMed (Select 23383238)

1.

Improved imputation of common and uncommon SNPs with a new reference set.

Wang Z, Jacobs KB, Yeager M, Hutchinson A, Sampson J, Chatterjee N, Albanes D, Berndt SI, Chung CC, Diver WR, Gapstur SM, Teras LR, Haiman CA, Henderson BE, Stram D, Deng X, Hsing AW, Virtamo J, Eberle MA, Stone JL, Purdue MP, Taylor P, Tucker M, Chanock SJ.

Nat Genet. 2011 Dec 27;44(1):6-7. doi: 10.1038/ng.1044. No abstract available.

2.

Performance of genotype imputation for rare variants identified in exons and flanking regions of genes.

Li L, Li Y, Browning SR, Browning BL, Slater AJ, Kong X, Aponte JL, Mooser VE, Chissoe SL, Whittaker JC, Nelson MR, Ehm MG.

PLoS One. 2011;6(9):e24945. doi: 10.1371/journal.pone.0024945. Epub 2011 Sep 19.

3.

Haplotype phasing: existing methods and new developments.

Browning SR, Browning BL.

Nat Rev Genet. 2011 Sep 16;12(10):703-14. doi: 10.1038/nrg3054. Review.

4.

HAPGEN2: simulation of multiple disease SNPs.

Su Z, Marchini J, Donnelly P.

Bioinformatics. 2011 Aug 15;27(16):2304-5. doi: 10.1093/bioinformatics/btr341. Epub 2011 Jun 8.

5.

Low-coverage sequencing: implications for design of complex trait association studies.

Li Y, Sidore C, Kang HM, Boehnke M, Abecasis GR.

Genome Res. 2011 Jun;21(6):940-51. doi: 10.1101/gr.117259.110. Epub 2011 Apr 1.

6.

MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes.

Li Y, Willer CJ, Ding J, Scheet P, Abecasis GR.

Genet Epidemiol. 2010 Dec;34(8):816-34. doi: 10.1002/gepi.20533.

7.

A map of human genome variation from population-scale sequencing.

1000 Genomes Project Consortium, Abecasis GR, Altshuler D, Auton A, Brooks LD, Durbin RM, Gibbs RA, Hurles ME, McVean GA.

Nature. 2010 Oct 28;467(7319):1061-73. doi: 10.1038/nature09534. Erratum in: Nature. 2011 May 26;473(7348):544. Xue, Yali [added]; Cartwright, Reed A [added]; Altshuler, David L [corrected to Altshuler, David]; Kebbel, Andrew [corrected to Keebler, Jonathan]; Koko-Gonzales, Paula [corrected to Kokko-Gonzales, Paula]; Nickerson, Debbie A [corrected to Nickerson, Deborah A].

8.

Genotype imputation for genome-wide association studies.

Marchini J, Howie B.

Nat Rev Genet. 2010 Jul;11(7):499-511. doi: 10.1038/nrg2796. Review.

PMID:
20517342
9.

Variants within the immunoregulatory CBLB gene are associated with multiple sclerosis.

Sanna S, Pitzalis M, Zoledziewska M, Zara I, Sidore C, Murru R, Whalen MB, Busonero F, Maschio A, Costa G, Melis MC, Deidda F, Poddie F, Morelli L, Farina G, Li Y, Dei M, Lai S, Mulas A, Cuccuru G, Porcu E, Liang L, Zavattari P, Moi L, Deriu E, Urru MF, Bajorek M, Satta MA, Cocco E, Ferrigno P, Sotgiu S, Pugliatti M, Traccis S, Angius A, Melis M, Rosati G, Abecasis GR, Uda M, Marrosu MG, Schlessinger D, Cucca F.

Nat Genet. 2010 Jun;42(6):495-7. doi: 10.1038/ng.584. Epub 2010 May 9.

10.

Meta-analysis and imputation refines the association of 15q25 with smoking quantity.

Liu JZ, Tozzi F, Waterworth DM, Pillai SG, Muglia P, Middleton L, Berrettini W, Knouff CW, Yuan X, Waeber G, Vollenweider P, Preisig M, Wareham NJ, Zhao JH, Loos RJ, Barroso I, Khaw KT, Grundy S, Barter P, Mahley R, Kesaniemi A, McPherson R, Vincent JB, Strauss J, Kennedy JL, Farmer A, McGuffin P, Day R, Matthews K, Bakke P, Gulsvik A, Lucae S, Ising M, Brueckl T, Horstmann S, Wichmann HE, Rawal R, Dahmen N, Lamina C, Polasek O, Zgaga L, Huffman J, Campbell S, Kooner J, Chambers JC, Burnett MS, Devaney JM, Pichard AD, Kent KM, Satler L, Lindsay JM, Waksman R, Epstein S, Wilson JF, Wild SH, Campbell H, Vitart V, Reilly MP, Li M, Qu L, Wilensky R, Matthai W, Hakonarson HH, Rader DJ, Franke A, Wittig M, Schäfer A, Uda M, Terracciano A, Xiao X, Busonero F, Scheet P, Schlessinger D, St Clair D, Rujescu D, Abecasis GR, Grabe HJ, Teumer A, Völzke H, Petersmann A, John U, Rudan I, Hayward C, Wright AF, Kolcic I, Wright BJ, Thompson JR, Balmforth AJ, Hall AS, Samani NJ, Anderson CA, Ahmad T, Mathew CG, Parkes M, Satsangi J, Caulfield M, Munroe PB, Farrall M, Dominiczak A, Worthington J, Thomson W, Eyre S, Barton A; Wellcome Trust Case Control Consortium, Mooser V, Francks C, Marchini J.

Nat Genet. 2010 May;42(5):436-40. doi: 10.1038/ng.572. Epub 2010 Apr 25.

11.

High-resolution detection of identity by descent in unrelated individuals.

Browning SR, Browning BL.

Am J Hum Genet. 2010 Apr 9;86(4):526-39. doi: 10.1016/j.ajhg.2010.02.021. Epub 2010 Mar 18.

12.

Population genetic inference from genomic sequence variation.

Pool JE, Hellmann I, Jensen JD, Nielsen R.

Genome Res. 2010 Mar;20(3):291-300. doi: 10.1101/gr.079509.108. Epub 2010 Jan 12. Review.

13.

Sequencing technologies - the next generation.

Metzker ML.

Nat Rev Genet. 2010 Jan;11(1):31-46. doi: 10.1038/nrg2626. Epub 2009 Dec 8. Review.

PMID:
19997069
14.

The UCSC Genome Browser database: update 2010.

Rhead B, Karolchik D, Kuhn RM, Hinrichs AS, Zweig AS, Fujita PA, Diekhans M, Smith KE, Rosenbloom KR, Raney BJ, Pohl A, Pheasant M, Meyer LR, Learned K, Hsu F, Hillman-Jackson J, Harte RA, Giardine B, Dreszer TR, Clawson H, Barber GP, Haussler D, Kent WJ.

Nucleic Acids Res. 2010 Jan;38(Database issue):D613-9. doi: 10.1093/nar/gkp939. Epub 2009 Nov 11.

15.

Designing genome-wide association studies: sample size, power, imputation, and the choice of genotyping chip.

Spencer CC, Su Z, Donnelly P, Marchini J.

PLoS Genet. 2009 May;5(5):e1000477. doi: 10.1371/journal.pgen.1000477. Epub 2009 May 15.

16.

Estimation of allele frequencies from high-coverage genome-sequencing projects.

Lynch M.

Genetics. 2009 May;182(1):295-301. doi: 10.1534/genetics.109.100479. Epub 2009 Mar 16.

17.

De novo fragment assembly with short mate-paired reads: Does the read length matter?

Chaisson MJ, Brinza D, Pevzner PA.

Genome Res. 2009 Feb;19(2):336-46. doi: 10.1101/gr.079053.108. Epub 2008 Dec 3.

18.

Analyses and comparison of accuracy of different genotype imputation methods.

Pei YF, Li J, Zhang L, Papasian CJ, Deng HW.

PLoS One. 2008;3(10):e3551. doi: 10.1371/journal.pone.0003551. Epub 2008 Oct 29.

19.

LDL-cholesterol concentrations: a genome-wide association study.

Sandhu MS, Waterworth DM, Debenham SL, Wheeler E, Papadakis K, Zhao JH, Song K, Yuan X, Johnson T, Ashford S, Inouye M, Luben R, Sims M, Hadley D, McArdle W, Barter P, Kesäniemi YA, Mahley RW, McPherson R, Grundy SM; Wellcome Trust Case Control Consortium, Bingham SA, Khaw KT, Loos RJ, Waeber G, Barroso I, Strachan DP, Deloukas P, Vollenweider P, Wareham NJ, Mooser V.

Lancet. 2008 Feb 9;371(9611):483-91. doi: 10.1016/S0140-6736(08)60208-1.

20.

Accounting for bias from sequencing error in population genetic estimates.

Johnson PL, Slatkin M.

Mol Biol Evol. 2008 Jan;25(1):199-206. Epub 2007 Nov 2.

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