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Results: 1 to 20 of 39

1.

Evaluation of 16S rDNA-based community profiling for human microbiome research.

Jumpstart Consortium Human Microbiome Project Data Generation Working Group.

PLoS One. 2012;7(6):e39315. doi: 10.1371/journal.pone.0039315. Epub 2012 Jun 13.

PMID:
22720093
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Bacterial translocation and changes in the intestinal microbiome in mouse models of liver disease.

Fouts DE, Torralba M, Nelson KE, Brenner DA, Schnabl B.

J Hepatol. 2012 Jun;56(6):1283-92. doi: 10.1016/j.jhep.2012.01.019. Epub 2012 Feb 9.

PMID:
22326468
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Colonic microbiome is altered in alcoholism.

Mutlu EA, Gillevet PM, Rangwala H, Sikaroodi M, Naqvi A, Engen PA, Kwasny M, Lau CK, Keshavarzian A.

Am J Physiol Gastrointest Liver Physiol. 2012 May 1;302(9):G966-78. doi: 10.1152/ajpgi.00380.2011. Epub 2012 Jan 12.

PMID:
22241860
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Using QIIME to analyze 16S rRNA gene sequences from microbial communities.

Kuczynski J, Stombaugh J, Walters WA, González A, Caporaso JG, Knight R.

Curr Protoc Bioinformatics. 2011 Dec;Chapter 10:Unit 10.7.. doi: 10.1002/0471250953.bi1007s36.

PMID:
22161565
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Lactobacillus rhamnosus GG treatment potentiates intestinal hypoxia-inducible factor, promotes intestinal integrity and ameliorates alcohol-induced liver injury.

Wang Y, Kirpich I, Liu Y, Ma Z, Barve S, McClain CJ, Feng W.

Am J Pathol. 2011 Dec;179(6):2866-75. doi: 10.1016/j.ajpath.2011.08.039. Erratum in: Am J Pathol. 2012 Jan;180(1):429-30.

PMID:
22093263
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Enteric dysbiosis associated with a mouse model of alcoholic liver disease.

Yan AW, Fouts DE, Brandl J, Stärkel P, Torralba M, Schott E, Tsukamoto H, Nelson KE, Brenner DA, Schnabl B.

Hepatology. 2011 Jan;53(1):96-105. doi: 10.1002/hep.24018. Epub 2010 Dec 10.

PMID:
21254165
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons.

Haas BJ, Gevers D, Earl AM, Feldgarden M, Ward DV, Giannoukos G, Ciulla D, Tabbaa D, Highlander SK, Sodergren E, Methé B, DeSantis TZ; Human Microbiome Consortium, Petrosino JF, Knight R, Birren BW.

Genome Res. 2011 Mar;21(3):494-504. doi: 10.1101/gr.112730.110. Epub 2011 Jan 6.

PMID:
21212162
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Molecular characterization of mucosal adherent bacteria and associations with colorectal adenomas.

Shen XJ, Rawls JF, Randall T, Burcal L, Mpande CN, Jenkins N, Jovov B, Abdo Z, Sandler RS, Keku TO.

Gut Microbes. 2010 May-Jun;1(3):138-47. doi: 10.4161/gmic.1.3.12360. Epub 2010 May 13.

PMID:
20740058
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities.

Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, Van Horn DJ, Weber CF.

Appl Environ Microbiol. 2009 Dec;75(23):7537-41. doi: 10.1128/AEM.01541-09. Epub 2009 Oct 2.

PMID:
19801464
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Survival of Lactobacillus reuteri DSM 17938 and Lactobacillus rhamnosus GG in the human gastrointestinal tract with daily consumption of a low-fat probiotic spread.

Dommels YE, Kemperman RA, Zebregs YE, Draaisma RB, Jol A, Wolvers DA, Vaughan EE, Albers R.

Appl Environ Microbiol. 2009 Oct;75(19):6198-204. doi: 10.1128/AEM.01054-09. Epub 2009 Aug 14.

PMID:
19684171
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Intestinal dysbiosis: a possible mechanism of alcohol-induced endotoxemia and alcoholic steatohepatitis in rats.

Mutlu E, Keshavarzian A, Engen P, Forsyth CB, Sikaroodi M, Gillevet P.

Alcohol Clin Exp Res. 2009 Oct;33(10):1836-46. doi: 10.1111/j.1530-0277.2009.01022.x. Epub 2009 Jul 23.

PMID:
19645728
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Statistical methods for detecting differentially abundant features in clinical metagenomic samples.

White JR, Nagarajan N, Pop M.

PLoS Comput Biol. 2009 Apr;5(4):e1000352. doi: 10.1371/journal.pcbi.1000352. Epub 2009 Apr 10.

PMID:
19360128
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Lactobacillus GG treatment ameliorates alcohol-induced intestinal oxidative stress, gut leakiness, and liver injury in a rat model of alcoholic steatohepatitis.

Forsyth CB, Farhadi A, Jakate SM, Tang Y, Shaikh M, Keshavarzian A.

Alcohol. 2009 Mar;43(2):163-72. doi: 10.1016/j.alcohol.2008.12.009.

PMID:
19251117
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Probiotics restore bowel flora and improve liver enzymes in human alcohol-induced liver injury: a pilot study.

Kirpich IA, Solovieva NV, Leikhter SN, Shidakova NA, Lebedeva OV, Sidorov PI, Bazhukova TA, Soloviev AG, Barve SS, McClain CJ, Cave M.

Alcohol. 2008 Dec;42(8):675-82. doi: 10.1016/j.alcohol.2008.08.006.

PMID:
19038698
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Splenda alters gut microflora and increases intestinal p-glycoprotein and cytochrome p-450 in male rats.

Abou-Donia MB, El-Masry EM, Abdel-Rahman AA, McLendon RE, Schiffman SS.

J Toxicol Environ Health A. 2008;71(21):1415-29. doi: 10.1080/15287390802328630.

PMID:
18800291
[PubMed - indexed for MEDLINE]
16.

Enhanced PDE4B expression augments LPS-inducible TNF expression in ethanol-primed monocytes: relevance to alcoholic liver disease.

Gobejishvili L, Barve S, Joshi-Barve S, McClain C.

Am J Physiol Gastrointest Liver Physiol. 2008 Oct;295(4):G718-24. doi: 10.1152/ajpgi.90232.2008. Epub 2008 Aug 7.

PMID:
18687753
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

An obesity-associated gut microbiome with increased capacity for energy harvest.

Turnbaugh PJ, Ley RE, Mahowald MA, Magrini V, Mardis ER, Gordon JI.

Nature. 2006 Dec 21;444(7122):1027-31.

PMID:
17183312
[PubMed - indexed for MEDLINE]
18.

UniFrac--an online tool for comparing microbial community diversity in a phylogenetic context.

Lozupone C, Hamady M, Knight R.

BMC Bioinformatics. 2006 Aug 7;7:371.

PMID:
16893466
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Impairment of the intestinal barrier by ethanol involves enteric microflora and mast cell activation in rodents.

Ferrier L, Bérard F, Debrauwer L, Chabo C, Langella P, Buéno L, Fioramonti J.

Am J Pathol. 2006 Apr;168(4):1148-54.

PMID:
16565490
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

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