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Items: 1 to 20 of 66

1.

Phosphorylation by cyclin-dependent kinase-9 controls ubiquitin-conjugating enzyme-2A function.

Shchebet A, Karpiuk O, Kremmer E, Eick D, Johnsen SA.

Cell Cycle. 2012 Jun 1;11(11):2122-7. doi: 10.4161/cc.20548. Epub 2012 Jun 1.

PMID:
22592529
2.

Cyclin K-containing kinase complexes maintain self-renewal in murine embryonic stem cells.

Dai Q, Lei T, Zhao C, Zhong J, Tang YZ, Chen B, Yang J, Li C, Wang S, Song X, Li L, Li Q.

J Biol Chem. 2012 Jul 20;287(30):25344-52. doi: 10.1074/jbc.M111.321760. Epub 2012 Apr 30.

3.

The Cyclin K/Cdk12 complex maintains genomic stability via regulation of expression of DNA damage response genes.

Blazek D, Kohoutek J, Bartholomeeusen K, Johansen E, Hulinkova P, Luo Z, Cimermancic P, Ule J, Peterlin BM.

Genes Dev. 2011 Oct 15;25(20):2158-72. doi: 10.1101/gad.16962311.

4.
5.

HMMSplicer: a tool for efficient and sensitive discovery of known and novel splice junctions in RNA-Seq data.

Dimon MT, Sorber K, DeRisi JL.

PLoS One. 2010 Nov 8;5(11):e13875. doi: 10.1371/journal.pone.0013875.

6.

Ensembl 2011.

Flicek P, Amode MR, Barrell D, Beal K, Brent S, Chen Y, Clapham P, Coates G, Fairley S, Fitzgerald S, Gordon L, Hendrix M, Hourlier T, Johnson N, Kähäri A, Keefe D, Keenan S, Kinsella R, Kokocinski F, Kulesha E, Larsson P, Longden I, McLaren W, Overduin B, Pritchard B, Riat HS, Rios D, Ritchie GR, Ruffier M, Schuster M, Sobral D, Spudich G, Tang YA, Trevanion S, Vandrovcova J, Vilella AJ, White S, Wilder SP, Zadissa A, Zamora J, Aken BL, Birney E, Cunningham F, Dunham I, Durbin R, Fernández-Suarez XM, Herrero J, Hubbard TJ, Parker A, Proctor G, Vogel J, Searle SM.

Nucleic Acids Res. 2011 Jan;39(Database issue):D800-6. doi: 10.1093/nar/gkq1064. Epub 2010 Nov 2.

7.

CDK12 is a transcription elongation-associated CTD kinase, the metazoan ortholog of yeast Ctk1.

Bartkowiak B, Liu P, Phatnani HP, Fuda NJ, Cooper JJ, Price DH, Adelman K, Lis JT, Greenleaf AL.

Genes Dev. 2010 Oct 15;24(20):2303-16. doi: 10.1101/gad.1968210.

8.

Cyclin-dependent kinase 9-cyclin K functions in the replication stress response.

Yu DS, Zhao R, Hsu EL, Cayer J, Ye F, Guo Y, Shyr Y, Cortez D.

EMBO Rep. 2010 Nov;11(11):876-82. doi: 10.1038/embor.2010.153. Epub 2010 Oct 8.

9.

Alternative expression analysis by RNA sequencing.

Griffith M, Griffith OL, Mwenifumbo J, Goya R, Morrissy AS, Morin RD, Corbett R, Tang MJ, Hou YC, Pugh TJ, Robertson G, Chittaranjan S, Ally A, Asano JK, Chan SY, Li HI, McDonald H, Teague K, Zhao Y, Zeng T, Delaney A, Hirst M, Morin GB, Jones SJ, Tai IT, Marra MA.

Nat Methods. 2010 Oct;7(10):843-7. doi: 10.1038/nmeth.1503. Epub 2010 Sep 12.

PMID:
20835245
10.

P-TEFb stimulates transcription elongation and pre-mRNA splicing through multilateral mechanisms.

Lenasi T, Barboric M.

RNA Biol. 2010 Mar-Apr;7(2):145-50. Epub 2010 Mar 29. Review.

PMID:
20305375
11.

Progression through the RNA polymerase II CTD cycle.

Buratowski S.

Mol Cell. 2009 Nov 25;36(4):541-6. doi: 10.1016/j.molcel.2009.10.019. Review.

12.

The SR protein family.

Shepard PJ, Hertel KJ.

Genome Biol. 2009;10(10):242. doi: 10.1186/gb-2009-10-10-242. Epub 2009 Oct 27. Review.

13.

"Cotranscriptionality": the transcription elongation complex as a nexus for nuclear transactions.

Perales R, Bentley D.

Mol Cell. 2009 Oct 23;36(2):178-91. doi: 10.1016/j.molcel.2009.09.018. Review.

14.

Defining mechanisms that regulate RNA polymerase II transcription in vivo.

Fuda NJ, Ardehali MB, Lis JT.

Nature. 2009 Sep 10;461(7261):186-92. doi: 10.1038/nature08449. Review.

15.

TFIIH-associated Cdk7 kinase functions in phosphorylation of C-terminal domain Ser7 residues, promoter-proximal pausing, and termination by RNA polymerase II.

Glover-Cutter K, Larochelle S, Erickson B, Zhang C, Shokat K, Fisher RP, Bentley DL.

Mol Cell Biol. 2009 Oct;29(20):5455-64. doi: 10.1128/MCB.00637-09. Epub 2009 Aug 10.

16.

CDK9/cyclin complexes modulate endoderm induction by direct interaction with Mix.3/mixer.

Zhu H, Doherty JR, Kuliyev E, Mead PE.

Dev Dyn. 2009 Jun;238(6):1346-57. doi: 10.1002/dvdy.21920.

17.

Phosphorylation of the Pol II CTD by KIN28 enhances BUR1/BUR2 recruitment and Ser2 CTD phosphorylation near promoters.

Qiu H, Hu C, Hinnebusch AG.

Mol Cell. 2009 Mar 27;33(6):752-62. doi: 10.1016/j.molcel.2009.02.018.

18.

Pre-mRNA processing reaches back to transcription and ahead to translation.

Moore MJ, Proudfoot NJ.

Cell. 2009 Feb 20;136(4):688-700. doi: 10.1016/j.cell.2009.02.001. Review.

19.

Role of the cyclin-dependent kinase 9-related pathway in mammalian gene expression and human diseases.

Romano G, Giordano A.

Cell Cycle. 2008 Dec;7(23):3664-8. Epub 2008 Dec 4. Review.

PMID:
19029809
20.

The structure of P-TEFb (CDK9/cyclin T1), its complex with flavopiridol and regulation by phosphorylation.

Baumli S, Lolli G, Lowe ED, Troiani S, Rusconi L, Bullock AN, Debreczeni JE, Knapp S, Johnson LN.

EMBO J. 2008 Jul 9;27(13):1907-18. doi: 10.1038/emboj.2008.121. Epub 2008 Jun 19.

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