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Items: 1 to 20 of 26

1.

Fast gapped-read alignment with Bowtie 2.

Langmead B, Salzberg SL.

Nat Methods. 2012 Mar 4;9(4):357-9. doi: 10.1038/nmeth.1923.

2.

Biological pathways to adaptability--interactions between genome, epigenome, nervous system and environment for adaptive behavior.

Wolf C, Linden DE.

Genes Brain Behav. 2012 Feb;11(1):3-28. doi: 10.1111/j.1601-183X.2011.00752.x. Epub 2011 Dec 13. Review.

3.

Neuronal activity modifies the DNA methylation landscape in the adult brain.

Guo JU, Ma DK, Mo H, Ball MP, Jang MH, Bonaguidi MA, Balazer JA, Eaves HL, Xie B, Ford E, Zhang K, Ming GL, Gao Y, Song H.

Nat Neurosci. 2011 Aug 28;14(10):1345-51. doi: 10.1038/nn.2900.

4.

Increased methylation variation in epigenetic domains across cancer types.

Hansen KD, Timp W, Bravo HC, Sabunciyan S, Langmead B, McDonald OG, Wen B, Wu H, Liu Y, Diep D, Briem E, Zhang K, Irizarry RA, Feinberg AP.

Nat Genet. 2011 Jun 26;43(8):768-75. doi: 10.1038/ng.865.

5.

mRNA helicases: the tacticians of translational control.

Parsyan A, Svitkin Y, Shahbazian D, Gkogkas C, Lasko P, Merrick WC, Sonenberg N.

Nat Rev Mol Cell Biol. 2011 Apr;12(4):235-45. doi: 10.1038/nrm3083. Review.

PMID:
21427765
6.

A conserved function of the chromatin ATPase Kismet in the regulation of hedgehog expression.

Terriente-Félix A, Molnar C, Gómez-Skarmeta JL, de Celis JF.

Dev Biol. 2011 Feb 15;350(2):382-92. doi: 10.1016/j.ydbio.2010.12.003. Epub 2010 Dec 10.

7.

The honey bee epigenomes: differential methylation of brain DNA in queens and workers.

Lyko F, Foret S, Kucharski R, Wolf S, Falckenhayn C, Maleszka R.

PLoS Biol. 2010 Nov 2;8(11):e1000506. doi: 10.1371/journal.pbio.1000506. Erratum in: PLoS Biol. 2011;9(1). doi: 10.1371/annotation/2db9ee19-faa4-43f2-af7a-c8aeacca8037.

8.

Social context, stress, and plasticity of aging.

Amdam GV.

Aging Cell. 2011 Feb;10(1):18-27. doi: 10.1111/j.1474-9726.2010.00647.x. Epub 2010 Dec 7. Review.

9.

Accurate genome-scale percentage DNA methylation estimates from microarray data.

Aryee MJ, Wu Z, Ladd-Acosta C, Herb B, Feinberg AP, Yegnasubramanian S, Irizarry RA.

Biostatistics. 2011 Apr;12(2):197-210. doi: 10.1093/biostatistics/kxq055. Epub 2010 Sep 21.

10.

Comprehensive methylome map of lineage commitment from haematopoietic progenitors.

Ji H, Ehrlich LI, Seita J, Murakami P, Doi A, Lindau P, Lee H, Aryee MJ, Irizarry RA, Kim K, Rossi DJ, Inlay MA, Serwold T, Karsunky H, Ho L, Daley GQ, Weissman IL, Feinberg AP.

Nature. 2010 Sep 16;467(7313):338-42. doi: 10.1038/nature09367. Epub 2010 Aug 15.

11.

Kismet/CHD7 regulates axon morphology, memory and locomotion in a Drosophila model of CHARGE syndrome.

Melicharek DJ, Ramirez LC, Singh S, Thompson R, Marenda DR.

Hum Mol Genet. 2010 Nov 1;19(21):4253-64. doi: 10.1093/hmg/ddq348. Epub 2010 Aug 17.

12.

Human DNA methylomes at base resolution show widespread epigenomic differences.

Lister R, Pelizzola M, Dowen RH, Hawkins RD, Hon G, Tonti-Filippini J, Nery JR, Lee L, Ye Z, Ngo QM, Edsall L, Antosiewicz-Bourget J, Stewart R, Ruotti V, Millar AH, Thomson JA, Ren B, Ecker JR.

Nature. 2009 Nov 19;462(7271):315-22. doi: 10.1038/nature08514. Epub 2009 Oct 14.

13.

DNA methylation is widespread and associated with differential gene expression in castes of the honeybee, Apis mellifera.

Elango N, Hunt BG, Goodisman MA, Yi SV.

Proc Natl Acad Sci U S A. 2009 Jul 7;106(27):11206-11. doi: 10.1073/pnas.0900301106. Epub 2009 Jun 25.

14.

TopHat: discovering splice junctions with RNA-Seq.

Trapnell C, Pachter L, Salzberg SL.

Bioinformatics. 2009 May 1;25(9):1105-11. doi: 10.1093/bioinformatics/btp120. Epub 2009 Mar 16.

15.

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.

Huang da W, Sherman BT, Lempicki RA.

Nat Protoc. 2009;4(1):44-57. doi: 10.1038/nprot.2008.211.

16.

ATAC is a double histone acetyltransferase complex that stimulates nucleosome sliding.

Suganuma T, Gutiérrez JL, Li B, Florens L, Swanson SK, Washburn MP, Abmayr SM, Workman JL.

Nat Struct Mol Biol. 2008 Apr;15(4):364-72. doi: 10.1038/nsmb.1397. Epub 2008 Mar 9.

PMID:
18327268
17.

Comprehensive high-throughput arrays for relative methylation (CHARM).

Irizarry RA, Ladd-Acosta C, Carvalho B, Wu H, Brandenburg SA, Jeddeloh JA, Wen B, Feinberg AP.

Genome Res. 2008 May;18(5):780-90. doi: 10.1101/gr.7301508. Epub 2008 Mar 3.

18.

Covalent modification of DNA regulates memory formation.

Miller CA, Sweatt JD.

Neuron. 2007 Mar 15;53(6):857-69. Erratum in: Neuron. 2008 Sep 25;59(6):1051.

19.

Functional CpG methylation system in a social insect.

Wang Y, Jorda M, Jones PL, Maleszka R, Ling X, Robertson HM, Mizzen CA, Peinado MA, Robinson GE.

Science. 2006 Oct 27;314(5799):645-7.

20.

Dead-box proteins: a family affair--active and passive players in RNP-remodeling.

Linder P.

Nucleic Acids Res. 2006;34(15):4168-80. Epub 2006 Aug 26. Review.

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