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Results: 1 to 20 of 49

1.

A High-Throughput Method for Illumina RNA-Seq Library Preparation.

Kumar R, Ichihashi Y, Kimura S, Chitwood DH, Headland LR, Peng J, Maloof JN, Sinha NR.

Front Plant Sci. 2012 Aug 28;3:202. doi: 10.3389/fpls.2012.00202. eCollection 2012.

PMID:
22973283
[PubMed]
Free PMC Article
2.

Gene-sharing networks reveal organizing principles of transcriptomes in Arabidopsis and other multicellular organisms.

Li S, Pandey S, Gookin TE, Zhao Z, Wilson L, Assmann SM.

Plant Cell. 2012 Apr;24(4):1362-78. doi: 10.1105/tpc.111.094748. Epub 2012 Apr 18.

PMID:
22517316
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

DNA millichips as a low-cost platform for gene expression analysis.

Heinrich KW, Wolfer J, Hong D, LeBlanc M, Sussman MR.

Plant Physiol. 2012 Jun;159(2):548-57. doi: 10.1104/pp.112.195230. Epub 2012 Apr 13.

PMID:
22505730
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Reference genome-independent assessment of mutation density using restriction enzyme-phased sequencing.

Monson-Miller J, Sanchez-Mendez DC, Fass J, Henry IM, Tai TH, Comai L.

BMC Genomics. 2012 Feb 14;13:72. doi: 10.1186/1471-2164-13-72.

PMID:
22333298
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Differential expression--the next generation and beyond.

Auer PL, Srivastava S, Doerge RW.

Brief Funct Genomics. 2012 Jan;11(1):57-62. doi: 10.1093/bfgp/elr041. Epub 2011 Dec 30. Review.

PMID:
22210853
[PubMed - indexed for MEDLINE]
6.

Differential expression in RNA-seq: a matter of depth.

Tarazona S, García-Alcalde F, Dopazo J, Ferrer A, Conesa A.

Genome Res. 2011 Dec;21(12):2213-23. doi: 10.1101/gr.124321.111. Epub 2011 Sep 8.

PMID:
21903743
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Multiple reference genomes and transcriptomes for Arabidopsis thaliana.

Gan X, Stegle O, Behr J, Steffen JG, Drewe P, Hildebrand KL, Lyngsoe R, Schultheiss SJ, Osborne EJ, Sreedharan VT, Kahles A, Bohnert R, Jean G, Derwent P, Kersey P, Belfield EJ, Harberd NP, Kemen E, Toomajian C, Kover PX, Clark RM, Rätsch G, Mott R.

Nature. 2011 Aug 28;477(7365):419-23. doi: 10.1038/nature10414.

PMID:
21874022
[PubMed - indexed for MEDLINE]
8.

Combining genome-wide association mapping and transcriptional networks to identify novel genes controlling glucosinolates in Arabidopsis thaliana.

Chan EK, Rowe HC, Corwin JA, Joseph B, Kliebenstein DJ.

PLoS Biol. 2011 Aug;9(8):e1001125. doi: 10.1371/journal.pbio.1001125. Epub 2011 Aug 16.

PMID:
21857804
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Network quantitative trait loci mapping of circadian clock outputs identifies metabolic pathway-to-clock linkages in Arabidopsis.

Kerwin RE, Jimenez-Gomez JM, Fulop D, Harmer SL, Maloof JN, Kliebenstein DJ.

Plant Cell. 2011 Feb;23(2):471-85. doi: 10.1105/tpc.110.082065. Epub 2011 Feb 22.

PMID:
21343415
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Network analysis identifies ELF3 as a QTL for the shade avoidance response in Arabidopsis.

Jiménez-Gómez JM, Wallace AD, Maloof JN.

PLoS Genet. 2010 Sep 9;6(9):e1001100. doi: 10.1371/journal.pgen.1001100.

PMID:
20838594
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Statistical design and analysis of RNA sequencing data.

Auer PL, Doerge RW.

Genetics. 2010 Jun;185(2):405-16. doi: 10.1534/genetics.110.114983. Epub 2010 May 3.

PMID:
20439781
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

A complex interplay of three R2R3 MYB transcription factors determines the profile of aliphatic glucosinolates in Arabidopsis.

Sønderby IE, Burow M, Rowe HC, Kliebenstein DJ, Halkier BA.

Plant Physiol. 2010 May;153(1):348-63. doi: 10.1104/pp.109.149286. Epub 2010 Mar 26.

PMID:
20348214
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

The genetic architecture of maize flowering time.

Buckler ES, Holland JB, Bradbury PJ, Acharya CB, Brown PJ, Browne C, Ersoz E, Flint-Garcia S, Garcia A, Glaubitz JC, Goodman MM, Harjes C, Guill K, Kroon DE, Larsson S, Lepak NK, Li H, Mitchell SE, Pressoir G, Peiffer JA, Rosas MO, Rocheford TR, Romay MC, Romero S, Salvo S, Sanchez Villeda H, da Silva HS, Sun Q, Tian F, Upadyayula N, Ware D, Yates H, Yu J, Zhang Z, Kresovich S, McMullen MD.

Science. 2009 Aug 7;325(5941):714-8. doi: 10.1126/science.1174276.

PMID:
19661422
[PubMed - indexed for MEDLINE]
Free Article
14.

Quantification of variation in expression networks.

Kliebenstein DJ.

Methods Mol Biol. 2009;553:227-45. doi: 10.1007/978-1-60327-563-7_11. Review.

PMID:
19588108
[PubMed - indexed for MEDLINE]
15.

The circadian system in higher plants.

Harmer SL.

Annu Rev Plant Biol. 2009;60:357-77. doi: 10.1146/annurev.arplant.043008.092054. Review.

PMID:
19575587
[PubMed - indexed for MEDLINE]
16.

Quantitative genomics: analyzing intraspecific variation using global gene expression polymorphisms or eQTLs.

Kliebenstein D.

Annu Rev Plant Biol. 2009;60:93-114. doi: 10.1146/annurev.arplant.043008.092114. Review.

PMID:
19012536
[PubMed - indexed for MEDLINE]
17.

Regulon organization of Arabidopsis.

Mentzen WI, Wurtele ES.

BMC Plant Biol. 2008 Sep 30;8:99. doi: 10.1186/1471-2229-8-99.

PMID:
18826618
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast.

Roguev A, Bandyopadhyay S, Zofall M, Zhang K, Fischer T, Collins SR, Qu H, Shales M, Park HO, Hayles J, Hoe KL, Kim DU, Ideker T, Grewal SI, Weissman JS, Krogan NJ.

Science. 2008 Oct 17;322(5900):405-10. doi: 10.1126/science.1162609. Epub 2008 Sep 25.

PMID:
18818364
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development.

Covington MF, Maloof JN, Straume M, Kay SA, Harmer SL.

Genome Biol. 2008;9(8):R130. doi: 10.1186/gb-2008-9-8-r130. Epub 2008 Aug 18.

PMID:
18710561
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Global analysis of genetic, epigenetic and transcriptional polymorphisms in Arabidopsis thaliana using whole genome tiling arrays.

Zhang X, Shiu SH, Cal A, Borevitz JO.

PLoS Genet. 2008 Mar 21;4(3):e1000032. doi: 10.1371/journal.pgen.1000032. Erratum in: PLoS Genet. 2008 Jun;4(6). doi: 10.1371/annotation/e21d3565-fec6-44d9-8fab-83da49c7c0b8. Shiu, Shinhan [corrected to Shiu, Shin-Han].

PMID:
18369451
[PubMed - indexed for MEDLINE]
Free PMC Article

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