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Items: 13


Subtype and pathway specific responses to anticancer compounds in breast cancer.

Heiser LM, Sadanandam A, Kuo WL, Benz SC, Goldstein TC, Ng S, Gibb WJ, Wang NJ, Ziyad S, Tong F, Bayani N, Hu Z, Billig JI, Dueregger A, Lewis S, Jakkula L, Korkola JE, Durinck S, Pepin F, Guan Y, Purdom E, Neuvial P, Bengtsson H, Wood KW, Smith PG, Vassilev LT, Hennessy BT, Greshock J, Bachman KE, Hardwicke MA, Park JW, Marton LJ, Wolf DM, Collisson EA, Neve RM, Mills GB, Speed TP, Feiler HS, Wooster RF, Haussler D, Stuart JM, Gray JW, Spellman PT.

Proc Natl Acad Sci U S A. 2012 Feb 21;109(8):2724-9. doi: 10.1073/pnas.1018854108. Epub 2011 Oct 14.


Integrated genomic analyses of ovarian carcinoma.

Cancer Genome Atlas Research Network.

Nature. 2011 Jun 29;474(7353):609-15. doi: 10.1038/nature10166. Erratum in: Nature. 2012 Oct 11;490(7419):298.


Improving the assessment of the outcome of nonsynonymous SNVs with a consensus deleteriousness score, Condel.

González-Pérez A, López-Bigas N.

Am J Hum Genet. 2011 Apr 8;88(4):440-9. doi: 10.1016/j.ajhg.2011.03.004. Epub 2011 Mar 31.


Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM.

Vaske CJ, Benz SC, Sanborn JZ, Earl D, Szeto C, Zhu J, Haussler D, Stuart JM.

Bioinformatics. 2010 Jun 15;26(12):i237-45. doi: 10.1093/bioinformatics/btq182.


A human functional protein interaction network and its application to cancer data analysis.

Wu G, Feng X, Stein L.

Genome Biol. 2010;11(5):R53. doi: 10.1186/gb-2010-11-5-r53. Epub 2010 May 19.


A method and server for predicting damaging missense mutations.

Adzhubei IA, Schmidt S, Peshkin L, Ramensky VE, Gerasimova A, Bork P, Kondrashov AS, Sunyaev SR.

Nat Methods. 2010 Apr;7(4):248-9. doi: 10.1038/nmeth0410-248. No abstract available.


Bioinformatic tools for identifying disease gene and SNP candidates.

Mooney SD, Krishnan VG, Evani US.

Methods Mol Biol. 2010;628:307-19. doi: 10.1007/978-1-60327-367-1_17. Review.


Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm.

Kumar P, Henikoff S, Ng PC.

Nat Protoc. 2009;4(7):1073-81. doi: 10.1038/nprot.2009.86. Epub 2009 Jun 25.


Comment on "The consensus coding sequences of human breast and colorectal cancers".

Getz G, Höfling H, Mesirov JP, Golub TR, Meyerson M, Tibshirani R, Lander ES.

Science. 2007 Sep 14;317(5844):1500.


A new mouse model to explore the initiation, progression, and therapy of BRAFV600E-induced lung tumors.

Dankort D, Filenova E, Collado M, Serrano M, Jones K, McMahon M.

Genes Dev. 2007 Feb 15;21(4):379-84. Epub 2007 Feb 13.


Bidirectional ephrin/Eph signaling in synaptic functions.

Aoto J, Chen L.

Brain Res. 2007 Dec 12;1184:72-80. Epub 2006 Dec 12. Review.


Inferring cellular networks using probabilistic graphical models.

Friedman N.

Science. 2004 Feb 6;303(5659):799-805. Review.

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