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Results: 1 to 20 of 26

1.

Risk behaviour and time as covariates for efficacy of the HIV vaccine regimen ALVAC-HIV (vCP1521) and AIDSVAX B/E: a post-hoc analysis of the Thai phase 3 efficacy trial RV 144.

Robb ML, Rerks-Ngarm S, Nitayaphan S, Pitisuttithum P, Kaewkungwal J, Kunasol P, Khamboonruang C, Thongcharoen P, Morgan P, Benenson M, Paris RM, Chiu J, Adams E, Francis D, Gurunathan S, Tartaglia J, Gilbert P, Stablein D, Michael NL, Kim JH.

Lancet Infect Dis. 2012 Jul;12(7):531-7. doi: 10.1016/S1473-3099(12)70088-9. Epub 2012 May 30.

PMID:
22652344
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

A short segment of the HIV-1 gp120 V1/V2 region is a major determinant of resistance to V1/V2 neutralizing antibodies.

Doria-Rose NA, Georgiev I, O'Dell S, Chuang GY, Staupe RP, McLellan JS, Gorman J, Pancera M, Bonsignori M, Haynes BF, Burton DR, Koff WC, Kwong PD, Mascola JR.

J Virol. 2012 Aug;86(15):8319-23. doi: 10.1128/JVI.00696-12. Epub 2012 May 23.

PMID:
22623764
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Immune-correlates analysis of an HIV-1 vaccine efficacy trial.

Haynes BF, Gilbert PB, McElrath MJ, Zolla-Pazner S, Tomaras GD, Alam SM, Evans DT, Montefiori DC, Karnasuta C, Sutthent R, Liao HX, DeVico AL, Lewis GK, Williams C, Pinter A, Fong Y, Janes H, DeCamp A, Huang Y, Rao M, Billings E, Karasavvas N, Robb ML, Ngauy V, de Souza MS, Paris R, Ferrari G, Bailer RT, Soderberg KA, Andrews C, Berman PW, Frahm N, De Rosa SC, Alpert MD, Yates NL, Shen X, Koup RA, Pitisuttithum P, Kaewkungwal J, Nitayaphan S, Rerks-Ngarm S, Michael NL, Kim JH.

N Engl J Med. 2012 Apr 5;366(14):1275-86. doi: 10.1056/NEJMoa1113425.

PMID:
22475592
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Nomenclature for immune correlates of protection after vaccination.

Plotkin SA, Gilbert PB.

Clin Infect Dis. 2012 Jun;54(11):1615-7. doi: 10.1093/cid/cis238. Epub 2012 Mar 20.

PMID:
22437237
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Structure of HIV-1 gp120 V1/V2 domain with broadly neutralizing antibody PG9.

McLellan JS, Pancera M, Carrico C, Gorman J, Julien JP, Khayat R, Louder R, Pejchal R, Sastry M, Dai K, O'Dell S, Patel N, Shahzad-ul-Hussan S, Yang Y, Zhang B, Zhou T, Zhu J, Boyington JC, Chuang GY, Diwanji D, Georgiev I, Kwon YD, Lee D, Louder MK, Moquin S, Schmidt SD, Yang ZY, Bonsignori M, Crump JA, Kapiga SH, Sam NE, Haynes BF, Burton DR, Koff WC, Walker LM, Phogat S, Wyatt R, Orwenyo J, Wang LX, Arthos J, Bewley CA, Mascola JR, Nabel GJ, Schief WR, Ward AB, Wilson IA, Kwong PD.

Nature. 2011 Nov 23;480(7377):336-43. doi: 10.1038/nature10696.

PMID:
22113616
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Evaluating immune correlates in HIV type 1 vaccine efficacy trials: what RV144 may provide.

Rolland M, Gilbert P.

AIDS Res Hum Retroviruses. 2012 Apr;28(4):400-4. doi: 10.1089/AID.2011.0240. Epub 2011 Sep 27.

PMID:
21902593
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Polyclonal B cell responses to conserved neutralization epitopes in a subset of HIV-1-infected individuals.

Tomaras GD, Binley JM, Gray ES, Crooks ET, Osawa K, Moore PL, Tumba N, Tong T, Shen X, Yates NL, Decker J, Wibmer CK, Gao F, Alam SM, Easterbrook P, Abdool Karim S, Kamanga G, Crump JA, Cohen M, Shaw GM, Mascola JR, Haynes BF, Montefiori DC, Morris L.

J Virol. 2011 Nov;85(21):11502-19. doi: 10.1128/JVI.05363-11. Epub 2011 Aug 17.

PMID:
21849452
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Statistical interpretation of the RV144 HIV vaccine efficacy trial in Thailand: a case study for statistical issues in efficacy trials.

Gilbert PB, Berger JO, Stablein D, Becker S, Essex M, Hammer SM, Kim JH, Degruttola VG.

J Infect Dis. 2011 Apr 1;203(7):969-75. doi: 10.1093/infdis/jiq152.

PMID:
21402548
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Genetic impact of vaccination on breakthrough HIV-1 sequences from the STEP trial.

Rolland M, Tovanabutra S, deCamp AC, Frahm N, Gilbert PB, Sanders-Buell E, Heath L, Magaret CA, Bose M, Bradfield A, O'Sullivan A, Crossler J, Jones T, Nau M, Wong K, Zhao H, Raugi DN, Sorensen S, Stoddard JN, Maust BS, Deng W, Hural J, Dubey S, Michael NL, Shiver J, Corey L, Li F, Self SG, Kim J, Buchbinder S, Casimiro DR, Robertson MN, Duerr A, McElrath MJ, McCutchan FE, Mullins JI.

Nat Med. 2011 Mar;17(3):366-71. doi: 10.1038/nm.2316. Epub 2011 Feb 27.

PMID:
21358627
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Potent and broad neutralization of HIV-1 subtype C by plasma antibodies targeting a quaternary epitope including residues in the V2 loop.

Moore PL, Gray ES, Sheward D, Madiga M, Ranchobe N, Lai Z, Honnen WJ, Nonyane M, Tumba N, Hermanus T, Sibeko S, Mlisana K, Abdool Karim SS, Williamson C, Pinter A, Morris L; CAPRISA 002 Study.

J Virol. 2011 Apr;85(7):3128-41. doi: 10.1128/JVI.02658-10. Epub 2011 Jan 26.

PMID:
21270156
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

The B cell response is redundant and highly focused on V1V2 during early subtype C infection in a Zambian seroconverter.

Lynch RM, Rong R, Boliar S, Sethi A, Li B, Mulenga J, Allen S, Robinson JE, Gnanakaran S, Derdeyn CA.

J Virol. 2011 Jan;85(2):905-15. doi: 10.1128/JVI.02006-10. Epub 2010 Oct 27.

PMID:
20980495
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Vaccination with ALVAC and AIDSVAX to prevent HIV-1 infection in Thailand.

Rerks-Ngarm S, Pitisuttithum P, Nitayaphan S, Kaewkungwal J, Chiu J, Paris R, Premsri N, Namwat C, de Souza M, Adams E, Benenson M, Gurunathan S, Tartaglia J, McNeil JG, Francis DP, Stablein D, Birx DL, Chunsuttiwat S, Khamboonruang C, Thongcharoen P, Robb ML, Michael NL, Kunasol P, Kim JH; MOPH-TAVEG Investigators.

N Engl J Med. 2009 Dec 3;361(23):2209-20. doi: 10.1056/NEJMoa0908492. Epub 2009 Oct 20.

PMID:
19843557
[PubMed - indexed for MEDLINE]
Free Article
13.

Limited neutralizing antibody specificities drive neutralization escape in early HIV-1 subtype C infection.

Moore PL, Ranchobe N, Lambson BE, Gray ES, Cave E, Abrahams MR, Bandawe G, Mlisana K, Abdool Karim SS, Williamson C, Morris L; CAPRISA 002 Study; NIAID Center for HIV/AIDS Vaccine Immunology (CHAVI).

PLoS Pathog. 2009 Sep;5(9):e1000598. doi: 10.1371/journal.ppat.1000598. Epub 2009 Sep 18.

PMID:
19763271
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Phylogenetic dependency networks: inferring patterns of CTL escape and codon covariation in HIV-1 Gag.

Carlson JM, Brumme ZL, Rousseau CM, Brumme CJ, Matthews P, Kadie C, Mullins JI, Walker BD, Harrigan PR, Goulder PJ, Heckerman D.

PLoS Comput Biol. 2008 Nov;4(11):e1000225. doi: 10.1371/journal.pcbi.1000225. Epub 2008 Nov 21.

PMID:
19023406
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

An evolutionary-network model reveals stratified interactions in the V3 loop of the HIV-1 envelope.

Poon AF, Lewis FI, Pond SL, Frost SD.

PLoS Comput Biol. 2007 Nov;3(11):e231. Epub 2007 Oct 11.

PMID:
18039027
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Computational characterization of B-cell epitopes.

Rubinstein ND, Mayrose I, Halperin D, Yekutieli D, Gershoni JM, Pupko T.

Mol Immunol. 2008 Jul;45(12):3477-89. Epub 2007 Nov 26.

PMID:
18023478
[PubMed - indexed for MEDLINE]
17.

Genome scanning tests for comparing amino acid sequences between groups.

Gilbert PB, Wu C, Jobes DV.

Biometrics. 2008 Mar;64(1):198-207. Epub 2007 Jun 30.

PMID:
17608781
[PubMed - indexed for MEDLINE]
18.

Covariability of selected amino acid positions for HIV type 1 subtypes C and B.

Gilbert PB, Novitsky V, Essex M.

AIDS Res Hum Retroviruses. 2005 Dec;21(12):1016-30.

PMID:
16379605
[PubMed - indexed for MEDLINE]
19.

Datamonkey: rapid detection of selective pressure on individual sites of codon alignments.

Pond SL, Frost SD.

Bioinformatics. 2005 May 15;21(10):2531-3. Epub 2005 Feb 15.

PMID:
15713735
[PubMed - indexed for MEDLINE]
Free Article
20.

Envelope-constrained neutralization-sensitive HIV-1 after heterosexual transmission.

Derdeyn CA, Decker JM, Bibollet-Ruche F, Mokili JL, Muldoon M, Denham SA, Heil ML, Kasolo F, Musonda R, Hahn BH, Shaw GM, Korber BT, Allen S, Hunter E.

Science. 2004 Mar 26;303(5666):2019-22.

PMID:
15044802
[PubMed - indexed for MEDLINE]
Free Article

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