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Results: 1 to 20 of 78

1.

Phosphorylation sites of higher stoichiometry are more conserved.

Tan CS, Bader GD.

Nat Methods. 2012 Mar 27;9(4):317; author reply 318. doi: 10.1038/nmeth.1941. No abstract available.

PMID:
22453906
[PubMed - indexed for MEDLINE]
2.

Cross-talk between phosphorylation and lysine acetylation in a genome-reduced bacterium.

van Noort V, Seebacher J, Bader S, Mohammed S, Vonkova I, Betts MJ, Kühner S, Kumar R, Maier T, O'Flaherty M, Rybin V, Schmeisky A, Yus E, Stülke J, Serrano L, Russell RB, Heck AJ, Bork P, Gavin AC.

Mol Syst Biol. 2012 Feb 28;8:571. doi: 10.1038/msb.2012.4.

PMID:
22373819
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Bioinformatic analysis and post-translational modification crosstalk prediction of lysine acetylation.

Lu Z, Cheng Z, Zhao Y, Volchenboum SL.

PLoS One. 2011;6(12):e28228. doi: 10.1371/journal.pone.0028228. Epub 2011 Dec 2.

PMID:
22164248
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

SMART 7: recent updates to the protein domain annotation resource.

Letunic I, Doerks T, Bork P.

Nucleic Acids Res. 2012 Jan;40(Database issue):D302-5. doi: 10.1093/nar/gkr931. Epub 2011 Nov 3.

PMID:
22053084
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Proteome-wide mapping of the Drosophila acetylome demonstrates a high degree of conservation of lysine acetylation.

Weinert BT, Wagner SA, Horn H, Henriksen P, Liu WR, Olsen JV, Jensen LJ, Choudhary C.

Sci Signal. 2011 Jul 26;4(183):ra48. doi: 10.1126/scisignal.2001902.

PMID:
21791702
[PubMed - indexed for MEDLINE]
Free Article
6.

Comparative genomics analysis of completely sequenced microbial genomes reveals the ubiquity of N-linked glycosylation in prokaryotes.

Kumar M, Balaji PV.

Mol Biosyst. 2011 May;7(5):1629-45. doi: 10.1039/c0mb00259c. Epub 2011 Mar 8.

PMID:
21387023
[PubMed - indexed for MEDLINE]
7.

TreeKO: a duplication-aware algorithm for the comparison of phylogenetic trees.

Marcet-Houben M, Gabaldón T.

Nucleic Acids Res. 2011 May;39(10):e66. doi: 10.1093/nar/gkr087. Epub 2011 Feb 18.

PMID:
21335609
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level.

Danielsen JM, Sylvestersen KB, Bekker-Jensen S, Szklarczyk D, Poulsen JW, Horn H, Jensen LJ, Mailand N, Nielsen ML.

Mol Cell Proteomics. 2011 Mar;10(3):M110.003590. doi: 10.1074/mcp.M110.003590. Epub 2010 Dec 7.

PMID:
21139048
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Lysine methylation of the NF-κB subunit RelA by SETD6 couples activity of the histone methyltransferase GLP at chromatin to tonic repression of NF-κB signaling.

Levy D, Kuo AJ, Chang Y, Schaefer U, Kitson C, Cheung P, Espejo A, Zee BM, Liu CL, Tangsombatvisit S, Tennen RI, Kuo AY, Tanjing S, Cheung R, Chua KF, Utz PJ, Shi X, Prinjha RK, Lee K, Garcia BA, Bedford MT, Tarakhovsky A, Cheng X, Gozani O.

Nat Immunol. 2011 Jan;12(1):29-36. doi: 10.1038/ni.1968. Epub 2010 Dec 5.

PMID:
21131967
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Database resources of the National Center for Biotechnology Information.

Sayers EW, Barrett T, Benson DA, Bolton E, Bryant SH, Canese K, Chetvernin V, Church DM, DiCuccio M, Federhen S, Feolo M, Fingerman IM, Geer LY, Helmberg W, Kapustin Y, Landsman D, Lipman DJ, Lu Z, Madden TL, Madej T, Maglott DR, Marchler-Bauer A, Miller V, Mizrachi I, Ostell J, Panchenko A, Phan L, Pruitt KD, Schuler GD, Sequeira E, Sherry ST, Shumway M, Sirotkin K, Slotta D, Souvorov A, Starchenko G, Tatusova TA, Wagner L, Wang Y, Wilbur WJ, Yaschenko E, Ye J.

Nucleic Acids Res. 2011 Jan;39(Database issue):D38-51. doi: 10.1093/nar/gkq1172. Epub 2010 Nov 21.

PMID:
21097890
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

PHOSIDA 2011: the posttranslational modification database.

Gnad F, Gunawardena J, Mann M.

Nucleic Acids Res. 2011 Jan;39(Database issue):D253-60. doi: 10.1093/nar/gkq1159. Epub 2010 Nov 16.

PMID:
21081558
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Phospho.ELM: a database of phosphorylation sites--update 2011.

Dinkel H, Chica C, Via A, Gould CM, Jensen LJ, Gibson TJ, Diella F.

Nucleic Acids Res. 2011 Jan;39(Database issue):D261-7. doi: 10.1093/nar/gkq1104. Epub 2010 Nov 9.

PMID:
21062810
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Cross-talk between post-translational modifications regulate life or death decisions by E2F1.

Kontaki H, Talianidis I.

Cell Cycle. 2010 Oct 1;9(19):3836-7. Epub 2010 Oct 18. No abstract available.

PMID:
20890118
[PubMed - indexed for MEDLINE]
Free Article
14.

Phosphorylated and nonphosphorylated serine and threonine residues evolve at different rates in mammals.

Chen SC, Chen FC, Li WH.

Mol Biol Evol. 2010 Nov;27(11):2548-54. doi: 10.1093/molbev/msq142. Epub 2010 Jun 9.

PMID:
20534707
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0.

Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O.

Syst Biol. 2010 May;59(3):307-21. doi: 10.1093/sysbio/syq010. Epub 2010 Mar 29.

PMID:
20525638
[PubMed - indexed for MEDLINE]
16.

Precision mapping of an in vivo N-glycoproteome reveals rigid topological and sequence constraints.

Zielinska DF, Gnad F, Wiśniewski JR, Mann M.

Cell. 2010 May 28;141(5):897-907. doi: 10.1016/j.cell.2010.04.012.

PMID:
20510933
[PubMed - indexed for MEDLINE]
Free Article
17.

SLiMFinder: a web server to find novel, significantly over-represented, short protein motifs.

Davey NE, Haslam NJ, Shields DC, Edwards RJ.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W534-9. doi: 10.1093/nar/gkq440. Epub 2010 May 23.

PMID:
20497999
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Post-translational modifications in signal integration.

Deribe YL, Pawson T, Dikic I.

Nat Struct Mol Biol. 2010 Jun;17(6):666-72. doi: 10.1038/nsmb.1842. Epub 2010 May 23. Review.

PMID:
20495563
[PubMed - indexed for MEDLINE]
19.

Machine learning approach to predict protein phosphorylation sites by incorporating evolutionary information.

Biswas AK, Noman N, Sikder AR.

BMC Bioinformatics. 2010 May 21;11:273. doi: 10.1186/1471-2105-11-273.

PMID:
20492656
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling.

Medina I, Carbonell J, Pulido L, Madeira SC, Goetz S, Conesa A, Tárraga J, Pascual-Montano A, Nogales-Cadenas R, Santoyo J, García F, Marbà M, Montaner D, Dopazo J.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W210-3. doi: 10.1093/nar/gkq388. Epub 2010 May 16.

PMID:
20478823
[PubMed - indexed for MEDLINE]
Free PMC Article
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