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Results: 1 to 20 of 40

1.

Phylogenetic analysis consistent with a clinical history of sexual transmission of HIV-1 from a single donor reveals transmission of highly distinct variants.

English S, Katzourakis A, Bonsall D, Flanagan P, Duda A, Fidler S, Weber J, McClure M; SPARTAC Trial Investigators, Phillips R, Frater J.

Retrovirology. 2011 Jul 7;8:54. doi: 10.1186/1742-4690-8-54.

PMID:
21736738
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Molecular and structural characterization of HIV-1 subtype B Brazilian isolates with GWGR tetramer at the tip of the V3-loop.

Leal E, Silva WP, Sucupira MC, Janini LM, Diaz RS.

Virology. 2008 Nov 25;381(2):222-9. doi: 10.1016/j.virol.2008.08.029. Epub 2008 Sep 23.

PMID:
18814897
[PubMed - indexed for MEDLINE]
Free Article
3.

Selective regimes and evolutionary rates of HIV-1 subtype B V3 variants in the Brazilian epidemic.

Diaz RS, Leal E, Sanabani S, Sucupira MC, Tanuri A, Sabino EC, Janini LM.

Virology. 2008 Nov 25;381(2):184-93. doi: 10.1016/j.virol.2008.08.014. Epub 2008 Sep 21.

PMID:
18809195
[PubMed - indexed for MEDLINE]
Free Article
4.

Autologous neutralizing humoral immunity and evolution of the viral envelope in the course of subtype B human immunodeficiency virus type 1 infection.

Bunnik EM, Pisas L, van Nuenen AC, Schuitemaker H.

J Virol. 2008 Aug;82(16):7932-41. doi: 10.1128/JVI.00757-08. Epub 2008 Jun 4.

PMID:
18524815
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Selective pressures of human immunodeficiency virus type 1 (HIV-1) during pediatric infection.

Leal E, Janini M, Diaz RS.

Infect Genet Evol. 2007 Dec;7(6):694-707. Epub 2007 Jul 22.

PMID:
17719854
[PubMed - indexed for MEDLINE]
6.

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0.

Tamura K, Dudley J, Nei M, Kumar S.

Mol Biol Evol. 2007 Aug;24(8):1596-9. Epub 2007 May 7.

PMID:
17488738
[PubMed - indexed for MEDLINE]
Free Article
7.

Synonymous substitution rates predict HIV disease progression as a result of underlying replication dynamics.

Lemey P, Kosakovsky Pond SL, Drummond AJ, Pybus OG, Shapiro B, Barroso H, Taveira N, Rambaut A.

PLoS Comput Biol. 2007 Feb 16;3(2):e29. Epub 2007 Jan 2.

PMID:
17305421
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Increased neutralization sensitivity of recently emerged CXCR4-using human immunodeficiency virus type 1 strains compared to coexisting CCR5-using variants from the same patient.

Bunnik EM, Quakkelaar ED, van Nuenen AC, Boeser-Nunnink B, Schuitemaker H.

J Virol. 2007 Jan;81(2):525-31. Epub 2006 Nov 1.

PMID:
17079299
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Rapid reversion of sequence polymorphisms dominates early human immunodeficiency virus type 1 evolution.

Li B, Gladden AD, Altfeld M, Kaldor JM, Cooper DA, Kelleher AD, Allen TM.

J Virol. 2007 Jan;81(1):193-201. Epub 2006 Oct 25.

PMID:
17065207
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

R5 and X4 HIV envelopes induce distinct gene expression profiles in primary peripheral blood mononuclear cells.

Cicala C, Arthos J, Martinelli E, Censoplano N, Cruz CC, Chung E, Selig SM, Van Ryk D, Yang J, Jagannatha S, Chun TW, Ren P, Lempicki RA, Fauci AS.

Proc Natl Acad Sci U S A. 2006 Mar 7;103(10):3746-51. Epub 2006 Feb 27.

PMID:
16505369
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Human immunodeficiency virus type 1 env evolves toward ancestral states upon transmission to a new host.

Herbeck JT, Nickle DC, Learn GH, Gottlieb GS, Curlin ME, Heath L, Mullins JI.

J Virol. 2006 Feb;80(4):1637-44.

PMID:
16439520
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Naïve and memory cell turnover as drivers of CCR5-to-CXCR4 tropism switch in human immunodeficiency virus type 1: implications for therapy.

Ribeiro RM, Hazenberg MD, Perelson AS, Davenport MP.

J Virol. 2006 Jan;80(2):802-9.

PMID:
16378982
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Neutralizing antibody responses drive the evolution of human immunodeficiency virus type 1 envelope during recent HIV infection.

Frost SD, Wrin T, Smith DM, Kosakovsky Pond SL, Liu Y, Paxinos E, Chappey C, Galovich J, Beauchaine J, Petropoulos CJ, Little SJ, Richman DD.

Proc Natl Acad Sci U S A. 2005 Dec 20;102(51):18514-9. Epub 2005 Dec 9.

PMID:
16339909
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Molecular footprint of drug-selective pressure in a human immunodeficiency virus transmission chain.

Lemey P, Derdelinckx I, Rambaut A, Van Laethem K, Dumont S, Vermeulen S, Van Wijngaerden E, Vandamme AM.

J Virol. 2005 Sep;79(18):11981-9.

PMID:
16140774
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Cryptic nature of a conserved, CD4-inducible V3 loop neutralization epitope in the native envelope glycoprotein oligomer of CCR5-restricted, but not CXCR4-using, primary human immunodeficiency virus type 1 strains.

Lusso P, Earl PL, Sironi F, Santoro F, Ripamonti C, Scarlatti G, Longhi R, Berger EA, Burastero SE.

J Virol. 2005 Jun;79(11):6957-68.

PMID:
15890935
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Evolutionary dynamics of the glycan shield of the human immunodeficiency virus envelope during natural infection and implications for exposure of the 2G12 epitope.

Dacheux L, Moreau A, Ataman-Onal Y, Biron F, Verrier B, Barin F.

J Virol. 2004 Nov;78(22):12625-37.

PMID:
15507649
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

A maximum likelihood method for detecting functional divergence at individual codon sites, with application to gene family evolution.

Bielawski JP, Yang Z.

J Mol Evol. 2004 Jul;59(1):121-32.

PMID:
15383915
[PubMed - indexed for MEDLINE]
18.

Distinct patterns of natural selection in the reverse transcriptase gene of HIV-1 in the presence and absence of antiretroviral therapy.

de S Leal E, Holmes EC, Zanotto PM.

Virology. 2004 Aug 1;325(2):181-91.

PMID:
15246258
[PubMed - indexed for MEDLINE]
Free Article
19.

Tracking global patterns of N-linked glycosylation site variation in highly variable viral glycoproteins: HIV, SIV, and HCV envelopes and influenza hemagglutinin.

Zhang M, Gaschen B, Blay W, Foley B, Haigwood N, Kuiken C, Korber B.

Glycobiology. 2004 Dec;14(12):1229-46. Epub 2004 Jun 2.

PMID:
15175256
[PubMed - indexed for MEDLINE]
Free Article
20.

TOPALi: software for automatic identification of recombinant sequences within DNA multiple alignments.

Milne I, Wright F, Rowe G, Marshall DF, Husmeier D, McGuire G.

Bioinformatics. 2004 Jul 22;20(11):1806-7. Epub 2004 Feb 26.

PMID:
14988107
[PubMed - indexed for MEDLINE]
Free Article

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