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Items: 1 to 20 of 43

1.

A general method to derive robust organ-specific gene expression-based differentiation indices: application to thyroid cancer diagnostic.

Tomás G, Tarabichi M, Gacquer D, Hébrant A, Dom G, Dumont JE, Keutgen X, Fahey TJ 3rd, Maenhaut C, Detours V.

Oncogene. 2012 Oct 11;31(41):4490-8. doi: 10.1038/onc.2011.626. Epub 2012 Jan 23.

PMID:
22266856
2.

The utility of biomarkers in the diagnosis and therapy of inflammatory bowel disease.

Lewis JD.

Gastroenterology. 2011 May;140(6):1817-1826.e2. doi: 10.1053/j.gastro.2010.11.058. Review.

3.

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons.

Haas BJ, Gevers D, Earl AM, Feldgarden M, Ward DV, Giannoukos G, Ciulla D, Tabbaa D, Highlander SK, Sodergren E, Methé B, DeSantis TZ; Human Microbiome Consortium, Petrosino JF, Knight R, Birren BW.

Genome Res. 2011 Mar;21(3):494-504. doi: 10.1101/gr.112730.110. Epub 2011 Jan 6.

4.

A pyrosequencing study in twins shows that gastrointestinal microbial profiles vary with inflammatory bowel disease phenotypes.

Willing BP, Dicksved J, Halfvarson J, Andersson AF, Lucio M, Zheng Z, Järnerot G, Tysk C, Jansson JK, Engstrand L.

Gastroenterology. 2010 Dec;139(6):1844-1854.e1. doi: 10.1053/j.gastro.2010.08.049. Epub 2010 Oct 8.

PMID:
20816835
5.

Appraisal of the pediatric Crohn's disease activity index on four prospectively collected datasets: recommended cutoff values and clinimetric properties.

Turner D, Griffiths AM, Walters TD, Seah T, Markowitz J, Pfefferkorn M, Keljo D, Otley A, Leleiko NS, Mack D, Hyams J, Levine A.

Am J Gastroenterol. 2010 Sep;105(9):2085-92. doi: 10.1038/ajg.2010.143. Epub 2010 Apr 6.

PMID:
20372111
6.

Appraisal of the pediatric ulcerative colitis activity index (PUCAI).

Turner D, Hyams J, Markowitz J, Lerer T, Mack DR, Evans J, Pfefferkorn M, Rosh J, Kay M, Crandall W, Keljo D, Otley AR, Kugathasan S, Carvalho R, Oliva-Hemker M, Langton C, Mamula P, Bousvaros A, LeLeiko N, Griffiths AM; Pediatric IBD Collaborative Research Group.

Inflamm Bowel Dis. 2009 Aug;15(8):1218-23. doi: 10.1002/ibd.20867.

PMID:
19161178
7.

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis.

Cole JR, Wang Q, Cardenas E, Fish J, Chai B, Farris RJ, Kulam-Syed-Mohideen AS, McGarrell DM, Marsh T, Garrity GM, Tiedje JM.

Nucleic Acids Res. 2009 Jan;37(Database issue):D141-5. doi: 10.1093/nar/gkn879. Epub 2008 Nov 12.

8.

Support vector machines and kernels for computational biology.

Ben-Hur A, Ong CS, Sonnenburg S, Schölkopf B, Rätsch G.

PLoS Comput Biol. 2008 Oct;4(10):e1000173. doi: 10.1371/journal.pcbi.1000173. Epub 2008 Oct 31. Review. No abstract available.

9.

An integrated genomic analysis of human glioblastoma multiforme.

Parsons DW, Jones S, Zhang X, Lin JC, Leary RJ, Angenendt P, Mankoo P, Carter H, Siu IM, Gallia GL, Olivi A, McLendon R, Rasheed BA, Keir S, Nikolskaya T, Nikolsky Y, Busam DA, Tekleab H, Diaz LA Jr, Hartigan J, Smith DR, Strausberg RL, Marie SK, Shinjo SM, Yan H, Riggins GJ, Bigner DD, Karchin R, Papadopoulos N, Parmigiani G, Vogelstein B, Velculescu VE, Kinzler KW.

Science. 2008 Sep 26;321(5897):1807-12. doi: 10.1126/science.1164382. Epub 2008 Sep 4.

10.

Disorders of a modern lifestyle: reconciling the epidemiology of inflammatory bowel diseases.

Bernstein CN, Shanahan F.

Gut. 2008 Sep;57(9):1185-91. doi: 10.1136/gut.2007.122143. Epub 2008 May 30. Review. No abstract available.

PMID:
18515412
11.

The genetics and immunopathogenesis of inflammatory bowel disease.

Cho JH.

Nat Rev Immunol. 2008 Jun;8(6):458-66. doi: 10.1038/nri2340. Review.

PMID:
18500230
12.

Molecular analysis of the gut microbiota of identical twins with Crohn's disease.

Dicksved J, Halfvarson J, Rosenquist M, Järnerot G, Tysk C, Apajalahti J, Engstrand L, Jansson JK.

ISME J. 2008 Jul;2(7):716-27. doi: 10.1038/ismej.2008.37. Epub 2008 Apr 10.

PMID:
18401439
13.

Innate and adaptive immune responses related to IBD pathogenesis.

Arseneau KO, Tamagawa H, Pizarro TT, Cominelli F.

Curr Gastroenterol Rep. 2007 Dec;9(6):508-12. Review.

PMID:
18377804
14.

Microbial host interactions in IBD: implications for pathogenesis and therapy.

Sartor RB, Muehlbauer M.

Curr Gastroenterol Rep. 2007 Dec;9(6):497-507. Review.

PMID:
18377803
15.

Nutritional concerns in pediatric inflammatory bowel disease patients.

Kappelman MD, Bousvaros A.

Mol Nutr Food Res. 2008 Aug;52(8):867-74. doi: 10.1002/mnfr.200700156. Review.

PMID:
18324705
16.

Microbial influences in inflammatory bowel diseases.

Sartor RB.

Gastroenterology. 2008 Feb;134(2):577-94. doi: 10.1053/j.gastro.2007.11.059. Review.

PMID:
18242222
17.

Evaluating different approaches that test whether microbial communities have the same structure.

Schloss PD.

ISME J. 2008 Mar;2(3):265-75. doi: 10.1038/ismej.2008.5. Epub 2008 Jan 31.

PMID:
18239608
18.

A review of feature selection techniques in bioinformatics.

Saeys Y, Inza I, Larrañaga P.

Bioinformatics. 2007 Oct 1;23(19):2507-17. Epub 2007 Aug 24. Review.

19.

Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases.

Frank DN, St Amand AL, Feldman RA, Boedeker EC, Harpaz N, Pace NR.

Proc Natl Acad Sci U S A. 2007 Aug 21;104(34):13780-5. Epub 2007 Aug 15.

20.

Machine learning and its applications to biology.

Tarca AL, Carey VJ, Chen XW, Romero R, Drăghici S.

PLoS Comput Biol. 2007 Jun;3(6):e116. Review. No abstract available.

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