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Whole genome sequences of three Treponema pallidum ssp. pertenue strains: yaws and syphilis treponemes differ in less than 0.2% of the genome sequence.

Cejková D, Zobaníková M, Chen L, Pospíšilová P, Strouhal M, Qin X, Mikalová L, Norris SJ, Muzny DM, Gibbs RA, Fulton LL, Sodergren E, Weinstock GM, Smajs D.

PLoS Negl Trop Dis. 2012 Jan;6(1):e1471. doi: 10.1371/journal.pntd.0001471. Epub 2012 Jan 24.


Complete genome sequence of Treponema paraluiscuniculi, strain Cuniculi A: the loss of infectivity to humans is associated with genome decay.

Šmajs D, Zobaníková M, Strouhal M, Čejková D, Dugan-Rocha S, Pospíšilová P, Norris SJ, Albert T, Qin X, Hallsworth-Pepin K, Buhay C, Muzny DM, Chen L, Gibbs RA, Weinstock GM.

PLoS One. 2011;6(5):e20415. doi: 10.1371/journal.pone.0020415. Epub 2011 May 31.


Enhanced molecular typing of treponema pallidum: geographical distribution of strain types and association with neurosyphilis.

Marra C, Sahi S, Tantalo L, Godornes C, Reid T, Behets F, Rompalo A, Klausner JD, Yin Y, Mulcahy F, Golden MR, Centurion-Lara A, Lukehart SA.

J Infect Dis. 2010 Nov 1;202(9):1380-8. doi: 10.1086/656533.


Complete genome sequence and annotation of the Treponema pallidum subsp. pallidum Chicago strain.

Giacani L, Jeffrey BM, Molini BJ, Le HT, Lukehart SA, Centurion-Lara A, Rockey DD.

J Bacteriol. 2010 May;192(10):2645-6. doi: 10.1128/JB.00159-10. Epub 2010 Mar 26.


Identification of concomitant infection with Chlamydia trachomatis IncA-negative mutant and wild-type strains by genomic, transcriptional, and biological characterizations.

Suchland RJ, Jeffrey BM, Xia M, Bhatia A, Chu HG, Rockey DD, Stamm WE.

Infect Immun. 2008 Dec;76(12):5438-46. doi: 10.1128/IAI.00984-08. Epub 2008 Oct 13.


Multiple sequence alignment using ClustalW and ClustalX.

Thompson JD, Gibson TJ, Higgins DG.

Curr Protoc Bioinformatics. 2002 Aug;Chapter 2:Unit 2.3. doi: 10.1002/0471250953.bi0203s00.


Mapping short DNA sequencing reads and calling variants using mapping quality scores.

Li H, Ruan J, Durbin R.

Genome Res. 2008 Nov;18(11):1851-8. doi: 10.1101/gr.078212.108. Epub 2008 Aug 19.


Complete genome sequence of Treponema pallidum ssp. pallidum strain SS14 determined with oligonucleotide arrays.

Matejková P, Strouhal M, Smajs D, Norris SJ, Palzkill T, Petrosino JF, Sodergren E, Norton JE, Singh J, Richmond TA, Molla MN, Albert TJ, Weinstock GM.

BMC Microbiol. 2008 May 15;8:76. doi: 10.1186/1471-2180-8-76.


Crystal structure and RNA binding of the Tex protein from Pseudomonas aeruginosa.

Johnson SJ, Close D, Robinson H, Vallet-Gely I, Dove SL, Hill CP.

J Mol Biol. 2008 Apr 11;377(5):1460-73. doi: 10.1016/j.jmb.2008.01.096. Epub 2008 Feb 12.


Length of guanosine homopolymeric repeats modulates promoter activity of subfamily II tpr genes of Treponema pallidum ssp. pallidum.

Giacani L, Lukehart S, Centurion-Lara A.

FEMS Immunol Med Microbiol. 2007 Nov;51(2):289-301. Epub 2007 Aug 7.


The need and plan for global elimination of congenital syphilis.

Schmid GP, Stoner BP, Hawkes S, Broutet N.

Sex Transm Dis. 2007 Jul;34(7 Suppl):S5-10. Review.


ZPS: visualization of recent adaptive evolution of proteins.

Chattopadhyay S, Dykhuizen DE, Sokurenko EV.

BMC Bioinformatics. 2007 Jun 7;8:187.


Quantitative analysis of tpr gene expression in Treponema pallidum isolates: Differences among isolates and correlation with T-cell responsiveness in experimental syphilis.

Giacani L, Molini B, Godornes C, Barrett L, Van Voorhis W, Centurion-Lara A, Lukehart SA.

Infect Immun. 2007 Jan;75(1):104-12. Epub 2006 Oct 9.


Tex, a putative transcriptional accessory factor, is involved in pathogen fitness in Streptococcus pneumoniae.

He X, Thornton J, Carmicle-Davis S, McDaniel LS.

Microb Pathog. 2006 Dec;41(6):199-206. Epub 2006 Sep 25.


TprK sequence diversity accumulates during infection of rabbits with Treponema pallidum subsp. pallidum Nichols strain.

LaFond RE, Centurion-Lara A, Godornes C, Van Voorhis WC, Lukehart SA.

Infect Immun. 2006 Mar;74(3):1896-906.


Immunological evaluation and cellular location analysis of the TprI antigen of Treponema pallidum subsp. pallidum.

Giacani L, Sambri V, Marangoni A, Cavrini F, Storni E, Donati M, Corona S, Lanzarini P, Cevenini R.

Infect Immun. 2005 Jun;73(6):3817-22.


Subfamily I Treponema pallidum repeat protein family: sequence variation and immunity.

Sun ES, Molini BJ, Barrett LK, Centurion-Lara A, Lukehart SA, Van Voorhis WC.

Microbes Infect. 2004 Jul;6(8):725-37.


Gene conversion: a mechanism for generation of heterogeneity in the tprK gene of Treponema pallidum during infection.

Centurion-Lara A, LaFond RE, Hevner K, Godornes C, Molini BJ, Van Voorhis WC, Lukehart SA.

Mol Microbiol. 2004 Jun;52(6):1579-96.


Sequence diversity of Treponema pallidum subsp. pallidum tprK in human syphilis lesions and rabbit-propagated isolates.

LaFond RE, Centurion-Lara A, Godornes C, Rompalo AM, Van Voorhis WC, Lukehart SA.

J Bacteriol. 2003 Nov;185(21):6262-8.

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