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Items: 1 to 20 of 45


Quantification of Transcriptome Responses of the Rumen Epithelium to Butyrate Infusion using RNA-seq Technology.

Baldwin RL 6th, Wu S, Li W, Li C, Bequette BJ, Li RW.

Gene Regul Syst Bio. 2012;6:67-80. doi: 10.4137/GRSB.S9687. Epub 2012 May 16.


Transcriptome characterization by RNA-seq unravels the mechanisms of butyrate-induced epigenomic regulation in bovine cells.

Wu S, Li RW, Li W, Li CJ.

PLoS One. 2012;7(5):e36940. doi: 10.1371/journal.pone.0036940. Epub 2012 May 15.


Sirtuins and disease: the road ahead.

Carafa V, Nebbioso A, Altucci L.

Front Pharmacol. 2012 Jan 31;3:4. doi: 10.3389/fphar.2012.00004. eCollection 2012.


Genome-wide ChIP-seq mapping and analysis reveal butyrate-induced acetylation of H3K9 and H3K27 correlated with transcription activity in bovine cells.

Shin JH, Li RW, Gao Y, Baldwin R 6th, Li CJ.

Funct Integr Genomics. 2012 Mar;12(1):119-30. doi: 10.1007/s10142-012-0263-6. Epub 2012 Jan 17.


Cytoskeleton remodeling and alterations in smooth muscle contractility in the bovine jejunum during nematode infection.

Li RW, Schroeder SG.

Funct Integr Genomics. 2012 Mar;12(1):35-44. doi: 10.1007/s10142-011-0259-7. Epub 2011 Dec 28.


Role of sirtuins, calorie restriction and physical activity in aging.

Corbi G, Conti V, Scapagnini G, Filippelli A, Ferrara N.

Front Biosci (Elite Ed). 2012 Jan 1;4:768-78. Review.


Characterization of the abomasal transcriptome for mechanisms of resistance to gastrointestinal nematodes in cattle.

Li RW, Rinaldi M, Capuco AV.

Vet Res. 2011 Nov 30;42:114. doi: 10.1186/1297-9716-42-114.


Potential beneficial effects of butyrate in intestinal and extraintestinal diseases.

Canani RB, Costanzo MD, Leone L, Pedata M, Meli R, Calignano A.

World J Gastroenterol. 2011 Mar 28;17(12):1519-28. doi: 10.3748/wjg.v17.i12. 1519. Review.


Spliceosome structure and function.

Will CL, Lührmann R.

Cold Spring Harb Perspect Biol. 2011 Jul 1;3(7). pii: a003707. doi: 10.1101/cshperspect.a003707. Review.


Sensitive gene fusion detection using ambiguously mapping RNA-Seq read pairs.

Kinsella M, Harismendy O, Nakano M, Frazer KA, Bafna V.

Bioinformatics. 2011 Apr 15;27(8):1068-75. doi: 10.1093/bioinformatics/btr085. Epub 2011 Feb 16.


Histone deacetylase activity modulates alternative splicing.

Hnilicová J, Hozeifi S, Dušková E, Icha J, Tománková T, Staněk D.

PLoS One. 2011 Feb 2;6(2):e16727. doi: 10.1371/journal.pone.0016727.


Deep RNA sequencing analysis of readthrough gene fusions in human prostate adenocarcinoma and reference samples.

Nacu S, Yuan W, Kan Z, Bhatt D, Rivers CS, Stinson J, Peters BA, Modrusan Z, Jung K, Seshagiri S, Wu TD.

BMC Med Genomics. 2011 Jan 24;4:11. doi: 10.1186/1755-8794-4-11.


Histone deacetylase inhibitors control the transcription and alternative splicing of prohibitin in thyroid tumor cells.

Puppin C, Passon N, Franzoni A, Russo D, Damante G.

Oncol Rep. 2011 Feb;25(2):393-7. doi: 10.3892/or.2010.1075. Epub 2010 Dec 7.


Analysis and design of RNA sequencing experiments for identifying isoform regulation.

Katz Y, Wang ET, Airoldi EM, Burge CB.

Nat Methods. 2010 Dec;7(12):1009-15. doi: 10.1038/nmeth.1528. Epub 2010 Nov 7.


Expression of conjoined genes: another mechanism for gene regulation in eukaryotes.

Prakash T, Sharma VK, Adati N, Ozawa R, Kumar N, Nishida Y, Fujikake T, Takeda T, Taylor TD.

PLoS One. 2010 Oct 12;5(10):e13284. doi: 10.1371/journal.pone.0013284.


SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data.

Cox MP, Peterson DA, Biggs PJ.

BMC Bioinformatics. 2010 Sep 27;11:485. doi: 10.1186/1471-2105-11-485.


Prohibitin as an oxidative stress biomarker in the eye.

Lee H, Arnouk H, Sripathi S, Chen P, Zhang R, Bartoli M, Hunt RC, Hrushesky WJ, Chung H, Lee SH, Jahng WJ.

Int J Biol Macromol. 2010 Dec 1;47(5):685-90. doi: 10.1016/j.ijbiomac.2010.08.018. Epub 2010 Sep 9.


MapSplice: accurate mapping of RNA-seq reads for splice junction discovery.

Wang K, Singh D, Zeng Z, Coleman SJ, Huang Y, Savich GL, He X, Mieczkowski P, Grimm SA, Perou CM, MacLeod JN, Chiang DY, Prins JF, Liu J.

Nucleic Acids Res. 2010 Oct;38(18):e178. doi: 10.1093/nar/gkq622. Epub 2010 Aug 27.


Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation.

Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, Salzberg SL, Wold BJ, Pachter L.

Nat Biotechnol. 2010 May;28(5):511-5. doi: 10.1038/nbt.1621. Epub 2010 May 2.


Butyrate increases the formation of anti-angiogenic vascular endothelial growth factor variants in human lung microvascular endothelial cells.

Ciura J, Jagodziński PP.

Mol Biol Rep. 2010 Dec;37(8):3729-34. doi: 10.1007/s11033-010-0026-1. Epub 2010 Mar 7.

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