Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 41

References for PMC Articles for PubMed (Select 22658416)

1.

Comprehensive analysis of RNA-Seq data reveals extensive RNA editing in a human transcriptome.

Peng Z, Cheng Y, Tan BC, Kang L, Tian Z, Zhu Y, Zhang W, Liang Y, Hu X, Tan X, Guo J, Dong Z, Liang Y, Bao L, Wang J.

Nat Biotechnol. 2012 Feb 12;30(3):253-60. doi: 10.1038/nbt.2122.

PMID:
22327324
2.

The intricate relationship between RNA structure, editing, and splicing.

Rieder LE, Reenan RA.

Semin Cell Dev Biol. 2012 May;23(3):281-8. doi: 10.1016/j.semcdb.2011.11.004. Epub 2011 Dec 8. Review.

PMID:
22178616
3.

Nascent-seq indicates widespread cotranscriptional pre-mRNA splicing in Drosophila.

Khodor YL, Rodriguez J, Abruzzi KC, Tang CH, Marr MT 2nd, Rosbash M.

Genes Dev. 2011 Dec 1;25(23):2502-12. doi: 10.1101/gad.178962.111.

4.

Drosophila CLOCK target gene characterization: implications for circadian tissue-specific gene expression.

Abruzzi KC, Rodriguez J, Menet JS, Desrochers J, Zadina A, Luo W, Tkachev S, Rosbash M.

Genes Dev. 2011 Nov 15;25(22):2374-86. doi: 10.1101/gad.174110.111.

5.

Predicting sites of ADAR editing in double-stranded RNA.

Eggington JM, Greene T, Bass BL.

Nat Commun. 2011;2:319. doi: 10.1038/ncomms1324.

6.

The developmental transcriptome of Drosophila melanogaster.

Graveley BR, Brooks AN, Carlson JW, Duff MO, Landolin JM, Yang L, Artieri CG, van Baren MJ, Boley N, Booth BW, Brown JB, Cherbas L, Davis CA, Dobin A, Li R, Lin W, Malone JH, Mattiuzzo NR, Miller D, Sturgill D, Tuch BB, Zaleski C, Zhang D, Blanchette M, Dudoit S, Eads B, Green RE, Hammonds A, Jiang L, Kapranov P, Langton L, Perrimon N, Sandler JE, Wan KH, Willingham A, Zhang Y, Zou Y, Andrews J, Bickel PJ, Brenner SE, Brent MR, Cherbas P, Gingeras TR, Hoskins RA, Kaufman TC, Oliver B, Celniker SE.

Nature. 2011 Mar 24;471(7339):473-9. doi: 10.1038/nature09715. Epub 2010 Dec 22.

7.

Engineered alterations in RNA editing modulate complex behavior in Drosophila: regulatory diversity of adenosine deaminase acting on RNA (ADAR) targets.

Jepson JE, Savva YA, Yokose C, Sugden AU, Sahin A, Reenan RA.

J Biol Chem. 2011 Mar 11;286(10):8325-37. doi: 10.1074/jbc.M110.186817. Epub 2010 Nov 15.

8.

TopHat: discovering splice junctions with RNA-Seq.

Trapnell C, Pachter L, Salzberg SL.

Bioinformatics. 2009 May 1;25(9):1105-11. doi: 10.1093/bioinformatics/btp120. Epub 2009 Mar 16.

9.

Regulated RNA editing and functional epistasis in Shaker potassium channels.

Ingleby L, Maloney R, Jepson J, Horn R, Reenan R.

J Gen Physiol. 2009 Jan;133(1):17-27. doi: 10.1085/jgp.200810133.

10.

Characterization of five RNA editing sites in Shab potassium channels.

Ryan MY, Maloney R, Reenan R, Horn R.

Channels (Austin). 2008 May-Jun;2(3):202-9. Epub 2008 May 2.

11.

SR proteins function in coupling RNAP II transcription to pre-mRNA splicing.

Das R, Yu J, Zhang Z, Gygi MP, Krainer AR, Gygi SP, Reed R.

Mol Cell. 2007 Jun 22;26(6):867-81.

12.

RNA editing and alternative splicing: the importance of co-transcriptional coordination.

Laurencikiene J, Källman AM, Fong N, Bentley DL, Ohman M.

EMBO Rep. 2006 Mar;7(3):303-7. Epub 2006 Jan 27.

13.

Tuning of RNA editing by ADAR is required in Drosophila.

Keegan LP, Brindle J, Gallo A, Leroy A, Reenan RA, O'Connell MA.

EMBO J. 2005 Jun 15;24(12):2183-93. Epub 2005 May 26.

14.

Retention and repression: fates of hyperedited RNAs in the nucleus.

DeCerbo J, Carmichael GG.

Curr Opin Cell Biol. 2005 Jun;17(3):302-8. Review.

PMID:
15901501
15.

Chromosomal storage of the RNA-editing enzyme ADAR1 in Xenopus oocytes.

Sallacz NB, Jantsch MF.

Mol Biol Cell. 2005 Jul;16(7):3377-86. Epub 2005 Apr 20.

16.

SINEs point to abundant editing in the human genome.

DeCerbo J, Carmichael GG.

Genome Biol. 2005;6(4):216. Epub 2005 Mar 31. Review.

17.

Molecular determinants and guided evolution of species-specific RNA editing.

Reenan RA.

Nature. 2005 Mar 17;434(7031):409-13.

PMID:
15772668
18.

Control of human potassium channel inactivation by editing of a small mRNA hairpin.

Bhalla T, Rosenthal JJ, Holmgren M, Reenan R.

Nat Struct Mol Biol. 2004 Oct;11(10):950-6. Epub 2004 Sep 7.

PMID:
15361858
19.

Pronounced instability of tandem IU base pairs in RNA.

Serra MJ, Smolter PE, Westhof E.

Nucleic Acids Res. 2004 Mar 22;32(5):1824-8. Print 2004.

20.

Structure and sequence determinants required for the RNA editing of ADAR2 substrates.

Dawson TR, Sansam CL, Emeson RB.

J Biol Chem. 2004 Feb 6;279(6):4941-51. Epub 2003 Nov 30.

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk