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Results: 1 to 20 of 65

1.

Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution.

Rhee HS, Pugh BF.

Cell. 2011 Dec 9;147(6):1408-19. doi: 10.1016/j.cell.2011.11.013.

PMID:
22153082
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Extensive role of the general regulatory factors, Abf1 and Rap1, in determining genome-wide chromatin structure in budding yeast.

Ganapathi M, Palumbo MJ, Ansari SA, He Q, Tsui K, Nislow C, Morse RH.

Nucleic Acids Res. 2011 Mar;39(6):2032-44. doi: 10.1093/nar/gkq1161. Epub 2010 Nov 16.

PMID:
21081559
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Design of a minimal silencer for the silent mating-type locus HML of Saccharomyces cerevisiae.

Weber JM, Ehrenhofer-Murray AE.

Nucleic Acids Res. 2010 Dec;38(22):7991-8000. doi: 10.1093/nar/gkq689. Epub 2010 Aug 10.

PMID:
20699276
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Mutational analysis of the Sir3 BAH domain reveals multiple points of interaction with nucleosomes.

Sampath V, Yuan P, Wang IX, Prugar E, van Leeuwen F, Sternglanz R.

Mol Cell Biol. 2009 May;29(10):2532-45. doi: 10.1128/MCB.01682-08. Epub 2009 Mar 9.

PMID:
19273586
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Compensatory interactions between Sir3p and the nucleosomal LRS surface imply their direct interaction.

Norris A, Bianchet MA, Boeke JD.

PLoS Genet. 2008 Dec;4(12):e1000301. doi: 10.1371/journal.pgen.1000301. Epub 2008 Dec 12.

PMID:
19079580
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Saccharomyces cerevisiae linker histone Hho1p functionally interacts with core histone H4 and negatively regulates the establishment of transcriptionally silent chromatin.

Yu Q, Kuzmiak H, Zou Y, Olsen L, Defossez PA, Bi X.

J Biol Chem. 2009 Jan 9;284(2):740-50. doi: 10.1074/jbc.M806274200. Epub 2008 Nov 18.

PMID:
19017647
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Positive roles of SAS2 in DNA replication and transcriptional silencing in yeast.

Zou Y, Bi X.

Nucleic Acids Res. 2008 Sep;36(16):5189-200. doi: 10.1093/nar/gkn465. Epub 2008 Aug 5.

PMID:
18682530
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Conversion of a replication origin to a silencer through a pathway shared by a Forkhead transcription factor and an S phase cyclin.

Casey L, Patterson EE, Müller U, Fox CA.

Mol Biol Cell. 2008 Feb;19(2):608-22. Epub 2007 Nov 28.

PMID:
18045995
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Genome-wide analysis of transcriptional dependence and probable target sites for Abf1 and Rap1 in Saccharomyces cerevisiae.

Yarragudi A, Parfrey LW, Morse RH.

Nucleic Acids Res. 2007;35(1):193-202. Epub 2006 Dec 7.

PMID:
17158163
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Asymmetric positioning of nucleosomes and directional establishment of transcriptionally silent chromatin by Saccharomyces cerevisiae silencers.

Zou Y, Yu Q, Bi X.

Mol Cell Biol. 2006 Oct;26(20):7806-19. Epub 2006 Aug 14.

PMID:
16908533
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Single-cell observations reveal intermediate transcriptional silencing states.

Xu EY, Zawadzki KA, Broach JR.

Mol Cell. 2006 Jul 21;23(2):219-29.

PMID:
16857588
[PubMed - indexed for MEDLINE]
Free Article
12.

Position effect on the directionality of silencer function in Saccharomyces cerevisiae.

Zou Y, Yu Q, Chiu YH, Bi X.

Genetics. 2006 Sep;174(1):203-13. Epub 2006 Jun 18.

PMID:
16783020
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Assembly of the SIR complex and its regulation by O-acetyl-ADP-ribose, a product of NAD-dependent histone deacetylation.

Liou GG, Tanny JC, Kruger RG, Walz T, Moazed D.

Cell. 2005 May 20;121(4):515-27.

PMID:
15907466
[PubMed - indexed for MEDLINE]
Free Article
14.

Mutations in the nucleosome core enhance transcriptional silencing.

Xu EY, Bi X, Holland MJ, Gottschling DE, Broach JR.

Mol Cell Biol. 2005 Mar;25(5):1846-59.

PMID:
15713639
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Comparison of ABF1 and RAP1 in chromatin opening and transactivator potentiation in the budding yeast Saccharomyces cerevisiae.

Yarragudi A, Miyake T, Li R, Morse RH.

Mol Cell Biol. 2004 Oct;24(20):9152-64.

PMID:
15456886
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Genome-wide analysis of ARS (autonomously replicating sequence) binding factor 1 (Abf1p)-mediated transcriptional regulation in Saccharomyces cerevisiae.

Miyake T, Reese J, Loch CM, Auble DT, Li R.

J Biol Chem. 2004 Aug 13;279(33):34865-72. Epub 2004 Jun 10.

PMID:
15192094
[PubMed - indexed for MEDLINE]
Free Article
17.

Multiple pathways for telomere tethering: functional implications of subnuclear position for heterochromatin formation.

Taddei A, Gasser SM.

Biochim Biophys Acta. 2004 Mar 15;1677(1-3):120-8. Review.

PMID:
15020053
[PubMed - indexed for MEDLINE]
Free Article
18.

Formation of boundaries of transcriptionally silent chromatin by nucleosome-excluding structures.

Bi X, Yu Q, Sandmeier JJ, Zou Y.

Mol Cell Biol. 2004 Mar;24(5):2118-31.

PMID:
14966290
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Repair of UV lesions in silenced chromatin provides in vivo evidence for a compact chromatin structure.

Livingstone-Zatchej M, Marcionelli R, Möller K, de Pril R, Thoma F.

J Biol Chem. 2003 Sep 26;278(39):37471-9. Epub 2003 Jul 25.

PMID:
12882973
[PubMed - indexed for MEDLINE]
Free Article
20.

The establishment, inheritance, and function of silenced chromatin in Saccharomyces cerevisiae.

Rusche LN, Kirchmaier AL, Rine J.

Annu Rev Biochem. 2003;72:481-516. Epub 2003 Mar 27. Review.

PMID:
12676793
[PubMed - indexed for MEDLINE]

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