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Results: 1 to 20 of 47

1.

Buffering and the evolution of chromosome-wide gene regulation.

Stenberg P, Larsson J.

Chromosoma. 2011 Jun;120(3):213-25. doi: 10.1007/s00412-011-0319-8. Epub 2011 Apr 20. Review.

PMID:
21505791
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Global analysis of the relationship between JIL-1 kinase and transcription.

Regnard C, Straub T, Mitterweger A, Dahlsveen IK, Fabian V, Becker PB.

PLoS Genet. 2011 Mar;7(3):e1001327. doi: 10.1371/journal.pgen.1001327. Epub 2011 Mar 10.

PMID:
21423663
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Drosophila dosage compensation: males are from Mars, females are from Venus.

Georgiev P, Chlamydas S, Akhtar A.

Fly (Austin). 2011 Apr-Jun;5(2):147-54. Epub 2011 Apr 1. Review.

PMID:
21339706
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Transcription modulation chromosome-wide: universal features and principles of dosage compensation in worms and flies.

Straub T, Becker PB.

Curr Opin Genet Dev. 2011 Apr;21(2):147-53. doi: 10.1016/j.gde.2011.01.012. Review.

PMID:
21316939
[PubMed - indexed for MEDLINE]
5.

Comprehensive analysis of the chromatin landscape in Drosophila melanogaster.

Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, Xi R, Jung YL, Park RW, Bishop EP, Canfield TK, Sandstrom R, Thurman RE, MacAlpine DM, Stamatoyannopoulos JA, Kellis M, Elgin SC, Kuroda MI, Pirrotta V, Karpen GH, Park PJ.

Nature. 2011 Mar 24;471(7339):480-5. doi: 10.1038/nature09725. Epub 2010 Dec 22.

PMID:
21179089
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Identification of functional elements and regulatory circuits by Drosophila modENCODE.

modENCODE Consortium, Roy S, Ernst J, Kharchenko PV, Kheradpour P, Negre N, Eaton ML, Landolin JM, Bristow CA, Ma L, Lin MF, Washietl S, Arshinoff BI, Ay F, Meyer PE, Robine N, Washington NL, Di Stefano L, Berezikov E, Brown CD, Candeias R, Carlson JW, Carr A, Jungreis I, Marbach D, Sealfon R, Tolstorukov MY, Will S, Alekseyenko AA, Artieri C, Booth BW, Brooks AN, Dai Q, Davis CA, Duff MO, Feng X, Gorchakov AA, Gu T, Henikoff JG, Kapranov P, Li R, MacAlpine HK, Malone J, Minoda A, Nordman J, Okamura K, Perry M, Powell SK, Riddle NC, Sakai A, Samsonova A, Sandler JE, Schwartz YB, Sher N, Spokony R, Sturgill D, van Baren M, Wan KH, Yang L, Yu C, Feingold E, Good P, Guyer M, Lowdon R, Ahmad K, Andrews J, Berger B, Brenner SE, Brent MR, Cherbas L, Elgin SC, Gingeras TR, Grossman R, Hoskins RA, Kaufman TC, Kent W, Kuroda MI, Orr-Weaver T, Perrimon N, Pirrotta V, Posakony JW, Ren B, Russell S, Cherbas P, Graveley BR, Lewis S, Micklem G, Oliver B, Park PJ, Celniker SE, Henikoff S, Karpen GH, Lai EC, MacAlpine DM, Stein LD, White KP, Kellis M.

Science. 2010 Dec 24;330(6012):1787-97. doi: 10.1126/science.1198374. Epub 2010 Dec 22.

PMID:
21177974
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Chromatin landscape dictates HSF binding to target DNA elements.

Guertin MJ, Lis JT.

PLoS Genet. 2010 Sep 9;6(9):e1001114. doi: 10.1371/journal.pgen.1001114.

PMID:
20844575
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Accessibility of the Drosophila genome discriminates PcG repression, H4K16 acetylation and replication timing.

Bell O, Schwaiger M, Oakeley EJ, Lienert F, Beisel C, Stadler MB, Schübeler D.

Nat Struct Mol Biol. 2010 Jul;17(7):894-900. doi: 10.1038/nsmb.1825. Epub 2010 Jun 20.

PMID:
20562853
[PubMed - indexed for MEDLINE]
9.

Expression in aneuploid Drosophila S2 cells.

Zhang Y, Malone JH, Powell SK, Periwal V, Spana E, Macalpine DM, Oliver B.

PLoS Biol. 2010 Feb 23;8(2):e1000320. doi: 10.1371/journal.pbio.1000320.

PMID:
20186269
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Nuclear pore proteins nup153 and megator define transcriptionally active regions in the Drosophila genome.

Vaquerizas JM, Suyama R, Kind J, Miura K, Luscombe NM, Akhtar A.

PLoS Genet. 2010 Feb 12;6(2):e1000846. doi: 10.1371/journal.pgen.1000846.

PMID:
20174442
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

The structure-function link of compensated chromatin in Drosophila.

Lucchesi JC.

Curr Opin Genet Dev. 2009 Dec;19(6):550-6. doi: 10.1016/j.gde.2009.10.004. Epub 2009 Oct 31. Review.

PMID:
19880310
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Long-range spreading of dosage compensation in Drosophila captures transcribed autosomal genes inserted on X.

Gorchakov AA, Alekseyenko AA, Kharchenko P, Park PJ, Kuroda MI.

Genes Dev. 2009 Oct 1;23(19):2266-71. doi: 10.1101/gad.1840409.

PMID:
19797766
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Drosophila MSL complex globally acetylates H4K16 on the male X chromosome for dosage compensation.

Gelbart ME, Larschan E, Peng S, Park PJ, Kuroda MI.

Nat Struct Mol Biol. 2009 Aug;16(8):825-32. doi: 10.1038/nsmb.1644. Epub 2009 Aug 2.

PMID:
19648925
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Drosophila dosage compensation: a complex voyage to the X chromosome.

Gelbart ME, Kuroda MI.

Development. 2009 May;136(9):1399-410. doi: 10.1242/dev.029645. Review.

PMID:
19363150
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.

Langmead B, Trapnell C, Pop M, Salzberg SL.

Genome Biol. 2009;10(3):R25. doi: 10.1186/gb-2009-10-3-r25. Epub 2009 Mar 4.

PMID:
19261174
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Genome-wide profiling of salt fractions maps physical properties of chromatin.

Henikoff S, Henikoff JG, Sakai A, Loeb GB, Ahmad K.

Genome Res. 2009 Mar;19(3):460-9. doi: 10.1101/gr.087619.108. Epub 2008 Dec 16.

PMID:
19088306
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

The chromosomal high-affinity binding sites for the Drosophila dosage compensation complex.

Straub T, Grimaud C, Gilfillan GD, Mitterweger A, Becker PB.

PLoS Genet. 2008 Dec;4(12):e1000302. doi: 10.1371/journal.pgen.1000302. Epub 2008 Dec 12.

PMID:
19079572
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Design and analysis of ChIP-seq experiments for DNA-binding proteins.

Kharchenko PV, Tolstorukov MY, Park PJ.

Nat Biotechnol. 2008 Dec;26(12):1351-9. doi: 10.1038/nbt.1508. Epub 2008 Nov 16.

PMID:
19029915
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

The MSL3 chromodomain directs a key targeting step for dosage compensation of the Drosophila melanogaster X chromosome.

Sural TH, Peng S, Li B, Workman JL, Park PJ, Kuroda MI.

Nat Struct Mol Biol. 2008 Dec;15(12):1318-25. doi: 10.1038/nsmb.1520. Epub 2008 Nov 23.

PMID:
19029895
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

FlyBase: enhancing Drosophila Gene Ontology annotations.

Tweedie S, Ashburner M, Falls K, Leyland P, McQuilton P, Marygold S, Millburn G, Osumi-Sutherland D, Schroeder A, Seal R, Zhang H; FlyBase Consortium.

Nucleic Acids Res. 2009 Jan;37(Database issue):D555-9. doi: 10.1093/nar/gkn788. Epub 2008 Oct 23.

PMID:
18948289
[PubMed - indexed for MEDLINE]
Free PMC Article

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