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References for PMC Articles for PubMed (Select 22540037)


Tra1 has specific regulatory roles, rather than global functions, within the SAGA co-activator complex.

Helmlinger D, Marguerat S, Villén J, Swaney DL, Gygi SP, Bähler J, Winston F.

EMBO J. 2011 Jun 3;30(14):2843-52. doi: 10.1038/emboj.2011.181.


Cytoscape 2.8: new features for data integration and network visualization.

Smoot ME, Ono K, Ruscheinski J, Wang PL, Ideker T.

Bioinformatics. 2011 Feb 1;27(3):431-2. doi: 10.1093/bioinformatics/btq675. Epub 2010 Dec 12.


Designing highly active siRNAs for therapeutic applications.

Walton SP, Wu M, Gredell JA, Chan C.

FEBS J. 2010 Dec;277(23):4806-13. doi: 10.1111/j.1742-4658.2010.07903.x. Review.


The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored.

Szklarczyk D, Franceschini A, Kuhn M, Simonovic M, Roth A, Minguez P, Doerks T, Stark M, Muller J, Bork P, Jensen LJ, von Mering C.

Nucleic Acids Res. 2011 Jan;39(Database issue):D561-8. doi: 10.1093/nar/gkq973. Epub 2010 Nov 2.


Rab-family GTPase regulates TOR complex 2 signaling in fission yeast.

Tatebe H, Morigasaki S, Murayama S, Zeng CT, Shiozaki K.

Curr Biol. 2010 Nov 23;20(22):1975-82. doi: 10.1016/j.cub.2010.10.026. Epub 2010 Oct 28.


Recent advances in charting protein-protein interaction: mass spectrometry-based approaches.

Gavin AC, Maeda K, Kühner S.

Curr Opin Biotechnol. 2011 Feb;22(1):42-9. doi: 10.1016/j.copbio.2010.09.007. Epub 2010 Oct 9. Review.


Bacterial sensor kinases: diversity in the recognition of environmental signals.

Krell T, Lacal J, Busch A, Silva-Jiménez H, Guazzaroni ME, Ramos JL.

Annu Rev Microbiol. 2010;64:539-59. doi: 10.1146/annurev.micro.112408.134054. Review.


Protein networks reveal detection bias and species consistency when analysed by information-theoretic methods.

Fernandes LP, Annibale A, Kleinjung J, Coolen AC, Fraternali F.

PLoS One. 2010 Aug 18;5(8):e12083. doi: 10.1371/journal.pone.0012083.


Simple sequence-based kernels do not predict protein-protein interactions.

Yu J, Guo M, Needham CJ, Huang Y, Cai L, Westhead DR.

Bioinformatics. 2010 Oct 15;26(20):2610-4. doi: 10.1093/bioinformatics/btq483. Epub 2010 Aug 27.


Sirt1’s beneficial roles in neurodegenerative diseases - a chaperonin containing TCP-1 (CCT) connection?

Gan BQ, Tang BL.

Aging Cell. 2010 Oct;9(5):924-9. doi: 10.1111/j.1474-9726.2010.00597.x. Review.


Struct2Net: a web service to predict protein-protein interactions using a structure-based approach.

Singh R, Park D, Xu J, Hosur R, Berger B.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W508-15. doi: 10.1093/nar/gkq481. Epub 2010 May 31.


A global protein kinase and phosphatase interaction network in yeast.

Breitkreutz A, Choi H, Sharom JR, Boucher L, Neduva V, Larsen B, Lin ZY, Breitkreutz BJ, Stark C, Liu G, Ahn J, Dewar-Darch D, Reguly T, Tang X, Almeida R, Qin ZS, Pawson T, Gingras AC, Nesvizhskii AI, Tyers M.

Science. 2010 May 21;328(5981):1043-6. doi: 10.1126/science.1176495.


Multiple faces of the SAGA complex.

Koutelou E, Hirsch CL, Dent SY.

Curr Opin Cell Biol. 2010 Jun;22(3):374-82. doi: 10.1016/ Epub 2010 Apr 2.


A novel link between Sus1 and the cytoplasmic mRNA decay machinery suggests a broad role in mRNA metabolism.

Cuenca-Bono B, García-Molinero V, Pascual-García P, García-Oliver E, Llopis A, Rodríguez-Navarro S.

BMC Cell Biol. 2010 Mar 15;11:19. doi: 10.1186/1471-2121-11-19.


Stc1: a critical link between RNAi and chromatin modification required for heterochromatin integrity.

Bayne EH, White SA, Kagansky A, Bijos DA, Sanchez-Pulido L, Hoe KL, Kim DU, Park HO, Ponting CP, Rappsilber J, Allshire RC.

Cell. 2010 Mar 5;140(5):666-77. doi: 10.1016/j.cell.2010.01.038.


Rho GTPases: regulation of cell polarity and growth in yeasts.

Perez P, Rincón SA.

Biochem J. 2010 Feb 24;426(3):243-53. doi: 10.1042/BJ20091823. Review.


Meta-analysis of genome regulation and expression variability across hundreds of environmental and genetic perturbations in fission yeast.

Pancaldi V, Schubert F, Bähler J.

Mol Biosyst. 2010 Mar;6(3):543-52. doi: 10.1039/b913876p. Epub 2009 Dec 15.


The polarisome is required for segregation and retrograde transport of protein aggregates.

Liu B, Larsson L, Caballero A, Hao X, Oling D, Grantham J, Nyström T.

Cell. 2010 Jan 22;140(2):257-67. doi: 10.1016/j.cell.2009.12.031.


Autophagy in the fission yeast Schizosaccharomyces pombe.

Mukaiyama H, Nakase M, Nakamura T, Kakinuma Y, Takegawa K.

FEBS Lett. 2010 Apr 2;584(7):1327-34. doi: 10.1016/j.febslet.2009.12.037. Epub 2009 Dec 27. Review.

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