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Results: 20

1.

[Rapid identification for Paenibacillus mucilaginosus by PCR].

Wang X, Ma M, Guan D, Jiang X, Li L, Ding Y, Li J.

Wei Sheng Wu Xue Bao. 2011 Nov 4;51(11):1485-93. Chinese.

PMID:
22260046
[PubMed - indexed for MEDLINE]
2.

Complete genome sequence of Bacillus amyloliquefaciens TA208, a strain for industrial production of guanosine and ribavirin.

Zhang G, Deng A, Xu Q, Liang Y, Chen N, Wen T.

J Bacteriol. 2011 Jun;193(12):3142-3. doi: 10.1128/JB.00440-11. Epub 2011 Apr 22.

PMID:
21515778
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Genomic signatures of strain selection and enhancement in Bacillus atrophaeus var. globigii, a historical biowarfare simulant.

Gibbons HS, Broomall SM, McNew LA, Daligault H, Chapman C, Bruce D, Karavis M, Krepps M, McGregor PA, Hong C, Park KH, Akmal A, Feldman A, Lin JS, Chang WE, Higgs BW, Demirev P, Lindquist J, Liem A, Fochler E, Read TD, Tapia R, Johnson S, Bishop-Lilly KA, Detter C, Han C, Sozhamannan S, Rosenzweig CN, Skowronski EW.

PLoS One. 2011 Mar 25;6(3):e17836. doi: 10.1371/journal.pone.0017836.

PMID:
21464989
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Metabolic flexibility revealed in the genome of the cyst-forming alpha-1 proteobacterium Rhodospirillum centenum.

Lu YK, Marden J, Han M, Swingley WD, Mastrian SD, Chowdhury SR, Hao J, Helmy T, Kim S, Kurdoglu AA, Matthies HJ, Rollo D, Stothard P, Blankenship RE, Bauer CE, Touchman JW.

BMC Genomics. 2010 May 25;11:325. doi: 10.1186/1471-2164-11-325.

PMID:
20500872
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

De novo assembly of human genomes with massively parallel short read sequencing.

Li R, Zhu H, Ruan J, Qian W, Fang X, Shi Z, Li Y, Li S, Shan G, Kristiansen K, Li S, Yang H, Wang J, Wang J.

Genome Res. 2010 Feb;20(2):265-72. doi: 10.1101/gr.097261.109. Epub 2009 Dec 17.

PMID:
20019144
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations.

Muller J, Szklarczyk D, Julien P, Letunic I, Roth A, Kuhn M, Powell S, von Mering C, Doerks T, Jensen LJ, Bork P.

Nucleic Acids Res. 2010 Jan;38(Database issue):D190-5. doi: 10.1093/nar/gkp951. Epub 2009 Nov 9.

PMID:
19900971
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Transfer of Bacillus mucilaginosus and Bacillus edaphicus to the genus Paenibacillus as Paenibacillus mucilaginosus comb. nov. and Paenibacillus edaphicus comb. nov.

Hu XF, Li SX, Wu JG, Wang JF, Fang QL, Chen JS.

Int J Syst Evol Microbiol. 2010 Jan;60(Pt 1):8-14. doi: 10.1099/ijs.0.008532-0. Epub 2009 Jul 30.

PMID:
19643872
[PubMed - indexed for MEDLINE]
Free Article
8.

Environmental genomics reveals a single-species ecosystem deep within Earth.

Chivian D, Brodie EL, Alm EJ, Culley DE, Dehal PS, DeSantis TZ, Gihring TM, Lapidus A, Lin LH, Lowry SR, Moser DP, Richardson PM, Southam G, Wanger G, Pratt LM, Andersen GL, Hazen TC, Brockman FJ, Arkin AP, Onstott TC.

Science. 2008 Oct 10;322(5899):275-8. doi: 10.1126/science.1155495.

PMID:
18845759
[PubMed - indexed for MEDLINE]
Free Article
9.

Comparative analysis of the complete genome sequence of the plant growth-promoting bacterium Bacillus amyloliquefaciens FZB42.

Chen XH, Koumoutsi A, Scholz R, Eisenreich A, Schneider K, Heinemeyer I, Morgenstern B, Voss B, Hess WR, Reva O, Junge H, Voigt B, Jungblut PR, Vater J, Süssmuth R, Liesegang H, Strittmatter A, Gottschalk G, Borriss R.

Nat Biotechnol. 2007 Sep;25(9):1007-14. Epub 2007 Aug 19.

PMID:
17704766
[PubMed - indexed for MEDLINE]
10.

RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Lagesen K, Hallin P, Rødland EA, Staerfeldt HH, Rognes T, Ussery DW.

Nucleic Acids Res. 2007;35(9):3100-8. Epub 2007 Apr 22.

PMID:
17452365
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Decomposition of silicate minerals by Bacillus mucilaginosus in liquid culture.

Liu W, Xu X, Wu X, Yang Q, Luo Y, Christie P.

Environ Geochem Health. 2006 Feb-Apr;28(1-2):133-40.

PMID:
16528584
[PubMed - indexed for MEDLINE]
12.

Genome sequencing in microfabricated high-density picolitre reactors.

Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman MS, Chen YJ, Chen Z, Dewell SB, Du L, Fierro JM, Gomes XV, Godwin BC, He W, Helgesen S, Ho CH, Irzyk GP, Jando SC, Alenquer ML, Jarvie TP, Jirage KB, Kim JB, Knight JR, Lanza JR, Leamon JH, Lefkowitz SM, Lei M, Li J, Lohman KL, Lu H, Makhijani VB, McDade KE, McKenna MP, Myers EW, Nickerson E, Nobile JR, Plant R, Puc BP, Ronan MT, Roth GT, Sarkis GJ, Simons JF, Simpson JW, Srinivasan M, Tartaro KR, Tomasz A, Vogt KA, Volkmer GA, Wang SH, Wang Y, Weiner MP, Yu P, Begley RF, Rothberg JM.

Nature. 2005 Sep 15;437(7057):376-80. Epub 2005 Jul 31. Erratum in: Nature. 2006 May 4;441(7089):120. Ho, Chun He [corrected to Ho, Chun Heen].

PMID:
16056220
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

The complete genome sequence of Bacillus licheniformis DSM13, an organism with great industrial potential.

Veith B, Herzberg C, Steckel S, Feesche J, Maurer KH, Ehrenreich P, Bäumer S, Henne A, Liesegang H, Merkl R, Ehrenreich A, Gottschalk G.

J Mol Microbiol Biotechnol. 2004;7(4):204-11.

PMID:
15383718
[PubMed - indexed for MEDLINE]
14.

Genome sequence of Symbiobacterium thermophilum, an uncultivable bacterium that depends on microbial commensalism.

Ueda K, Yamashita A, Ishikawa J, Shimada M, Watsuji TO, Morimura K, Ikeda H, Hattori M, Beppu T.

Nucleic Acids Res. 2004 Sep 21;32(16):4937-44. Print 2004.

PMID:
15383646
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

EMBOSS: the European Molecular Biology Open Software Suite.

Rice P, Longden I, Bleasby A.

Trends Genet. 2000 Jun;16(6):276-7. No abstract available.

PMID:
10827456
[PubMed - indexed for MEDLINE]
16.

KEGG: kyoto encyclopedia of genes and genomes.

Kanehisa M, Goto S.

Nucleic Acids Res. 2000 Jan 1;28(1):27-30.

PMID:
10592173
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Improved microbial gene identification with GLIMMER.

Delcher AL, Harmon D, Kasif S, White O, Salzberg SL.

Nucleic Acids Res. 1999 Dec 1;27(23):4636-41.

PMID:
10556321
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Sequencing and functional annotation of the Bacillus subtilis genes in the 200 kb rrnB-dnaB region.

Lapidus A, Galleron N, Sorokin A, Ehrlich SD.

Microbiology. 1997 Nov;143 ( Pt 11):3431-41.

PMID:
9387221
[PubMed - indexed for MEDLINE]
Free Article
19.

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ.

Nucleic Acids Res. 1997 Sep 1;25(17):3389-402. Review.

PMID:
9254694
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Lowe TM, Eddy SR.

Nucleic Acids Res. 1997 Mar 1;25(5):955-64.

PMID:
9023104
[PubMed - indexed for MEDLINE]
Free PMC Article

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