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Results: 1 to 20 of 26

References for PMC Articles for PubMed (Select 22495308)

1.

Understanding the transcriptome through RNA structure.

Wan Y, Kertesz M, Spitale RC, Segal E, Chang HY.

Nat Rev Genet. 2011 Aug 18;12(9):641-55. doi: 10.1038/nrg3049. Review.

2.

An integrated ChIP-seq analysis platform with customizable workflows.

Giannopoulou EG, Elemento O.

BMC Bioinformatics. 2011 Jul 7;12:277. doi: 10.1186/1471-2105-12-277.

3.

Global quantification of mammalian gene expression control.

Schwanhäusser B, Busse D, Li N, Dittmar G, Schuchhardt J, Wolf J, Chen W, Selbach M.

Nature. 2011 May 19;473(7347):337-42. doi: 10.1038/nature10098. Erratum in: Nature. 2013 Mar 7;495(7439):126-7.

PMID:
21593866
4.

RNA secondary structure in mutually exclusive splicing.

Yang Y, Zhan L, Zhang W, Sun F, Wang W, Tian N, Bi J, Wang H, Shi D, Jiang Y, Zhang Y, Jin Y.

Nat Struct Mol Biol. 2011 Feb;18(2):159-68. doi: 10.1038/nsmb.1959. Epub 2011 Jan 9.

PMID:
21217700
5.

Nuclear import of histone deacetylase 5 by requisite nuclear localization signal phosphorylation.

Greco TM, Yu F, Guise AJ, Cristea IM.

Mol Cell Proteomics. 2011 Feb;10(2):M110.004317. doi: 10.1074/mcp.M110.004317. Epub 2010 Nov 16.

6.

Genome-wide measurement of RNA secondary structure in yeast.

Kertesz M, Wan Y, Mazor E, Rinn JL, Nutter RC, Chang HY, Segal E.

Nature. 2010 Sep 2;467(7311):103-7. doi: 10.1038/nature09322.

7.

Antagonistic role of hnRNP A1 and KSRP in the regulation of let-7a biogenesis.

Michlewski G, Cáceres JF.

Nat Struct Mol Biol. 2010 Aug;17(8):1011-8. doi: 10.1038/nsmb.1874. Epub 2010 Jul 18.

8.

Deciphering the splicing code.

Barash Y, Calarco JA, Gao W, Pan Q, Wang X, Shai O, Blencowe BJ, Frey BJ.

Nature. 2010 May 6;465(7294):53-9. doi: 10.1038/nature09000.

PMID:
20445623
9.

Revealing global regulatory perturbations across human cancers.

Goodarzi H, Elemento O, Tavazoie S.

Mol Cell. 2009 Dec 11;36(5):900-11. doi: 10.1016/j.molcel.2009.11.016.

10.

Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps.

Chi SW, Zang JB, Mele A, Darnell RB.

Nature. 2009 Jul 23;460(7254):479-86. doi: 10.1038/nature08170. Epub 2009 Jun 17.

11.

Universal sample preparation method for proteome analysis.

Wiśniewski JR, Zougman A, Nagaraj N, Mann M.

Nat Methods. 2009 May;6(5):359-62. doi: 10.1038/nmeth.1322. Epub 2009 Apr 19.

PMID:
19377485
12.

CLIP: crosslinking and immunoprecipitation of in vivo RNA targets of RNA-binding proteins.

Jensen KB, Darnell RB.

Methods Mol Biol. 2008;488:85-98. doi: 10.1007/978-1-60327-475-3_6.

PMID:
18982285
13.

HITS-CLIP yields genome-wide insights into brain alternative RNA processing.

Licatalosi DD, Mele A, Fak JJ, Ule J, Kayikci M, Chi SW, Clark TA, Schweitzer AC, Blume JE, Wang X, Darnell JC, Darnell RB.

Nature. 2008 Nov 27;456(7221):464-9. doi: 10.1038/nature07488. Epub 2008 Nov 2.

14.

Computational prediction of RNA structural motifs involved in posttranscriptional regulatory processes.

Rabani M, Kertesz M, Segal E.

Proc Natl Acad Sci U S A. 2008 Sep 30;105(39):14885-90. doi: 10.1073/pnas.0803169105. Epub 2008 Sep 24.

15.

High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay.

Dölken L, Ruzsics Z, Rädle B, Friedel CC, Zimmer R, Mages J, Hoffmann R, Dickinson P, Forster T, Ghazal P, Koszinowski UH.

RNA. 2008 Sep;14(9):1959-72. doi: 10.1261/rna.1136108. Epub 2008 Jul 24.

16.

A universal framework for regulatory element discovery across all genomes and data types.

Elemento O, Slonim N, Tavazoie S.

Mol Cell. 2007 Oct 26;28(2):337-50.

17.

Isolation of specific RNA-binding proteins using the streptomycin-binding RNA aptamer.

Windbichler N, Schroeder R.

Nat Protoc. 2006;1(2):637-40.

PMID:
17406291
18.
19.

Silencing or knocking out eukaryotic gene expression by oligodeoxynucleotide decoys.

Cutroneo KR, Ehrlich H.

Crit Rev Eukaryot Gene Expr. 2006;16(1):23-30. Review.

PMID:
16584380
20.

RNAProfile: an algorithm for finding conserved secondary structure motifs in unaligned RNA sequences.

Pavesi G, Mauri G, Stefani M, Pesole G.

Nucleic Acids Res. 2004 Jun 15;32(10):3258-69. Print 2004.

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