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Results: 17

1.

Genome sequences of the biotechnologically important Bacillus megaterium strains QM B1551 and DSM319.

Eppinger M, Bunk B, Johns MA, Edirisinghe JN, Kutumbaka KK, Koenig SS, Creasy HH, Rosovitz MJ, Riley DR, Daugherty S, Martin M, Elbourne LD, Paulsen I, Biedendieck R, Braun C, Grayburn S, Dhingra S, Lukyanchuk V, Ball B, Ul-Qamar R, Seibel J, Bremer E, Jahn D, Ravel J, Vary PS.

J Bacteriol. 2011 Aug;193(16):4199-213. doi: 10.1128/JB.00449-11. Epub 2011 Jun 24.

PMID:
21705586
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

The genome sequence of Bacillus subtilis subsp. spizizenii W23: insights into speciation within the B. subtilis complex and into the history of B. subtilis genetics.

Zeigler DR.

Microbiology. 2011 Jul;157(Pt 7):2033-41. doi: 10.1099/mic.0.048520-0. Epub 2011 Apr 28.

PMID:
21527469
[PubMed - indexed for MEDLINE]
Free Article
3.

Complete genome sequence of Bacillus subtilis BSn5, an endophytic bacterium of Amorphophallus konjac with antimicrobial activity for the plant pathogen Erwinia carotovora subsp. carotovora.

Deng Y, Zhu Y, Wang P, Zhu L, Zheng J, Li R, Ruan L, Peng D, Sun M.

J Bacteriol. 2011 Apr;193(8):2070-1. doi: 10.1128/JB.00129-11. Epub 2011 Feb 11.

PMID:
21317323
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Genome sequence of Bacillus subtilis subsp. spizizenii gtP20b, isolated from the Indian ocean.

Fan L, Bo S, Chen H, Ye W, Kleinschmidt K, Baumann HI, Imhoff JF, Kleine M, Cai D.

J Bacteriol. 2011 Mar;193(5):1276-7. doi: 10.1128/JB.01351-10. Epub 2010 Dec 23.

PMID:
21183663
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Whole genome assembly of a natto production strain Bacillus subtilis natto from very short read data.

Nishito Y, Osana Y, Hachiya T, Popendorf K, Toyoda A, Fujiyama A, Itaya M, Sakakibara Y.

BMC Genomics. 2010 Apr 16;11:243. doi: 10.1186/1471-2164-11-243.

PMID:
20398357
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Genome sequence of the deep-rooted Yersinia pestis strain Angola reveals new insights into the evolution and pangenome of the plague bacterium.

Eppinger M, Worsham PL, Nikolich MP, Riley DR, Sebastian Y, Mou S, Achtman M, Lindler LE, Ravel J.

J Bacteriol. 2010 Mar;192(6):1685-99. doi: 10.1128/JB.01518-09. Epub 2010 Jan 8.

PMID:
20061468
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Reordering contigs of draft genomes using the Mauve aligner.

Rissman AI, Mau B, Biehl BS, Darling AE, Glasner JD, Perna NT.

Bioinformatics. 2009 Aug 15;25(16):2071-3. doi: 10.1093/bioinformatics/btp356. Epub 2009 Jun 10.

PMID:
19515959
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later.

Barbe V, Cruveiller S, Kunst F, Lenoble P, Meurice G, Sekowska A, Vallenet D, Wang T, Moszer I, Médigue C, Danchin A.

Microbiology. 2009 Jun;155(Pt 6):1758-75. doi: 10.1099/mic.0.027839-0. Epub 2009 Apr 21.

PMID:
19383706
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

High-precision, whole-genome sequencing of laboratory strains facilitates genetic studies.

Srivatsan A, Han Y, Peng J, Tehranchi AK, Gibbs R, Wang JD, Chen R.

PLoS Genet. 2008 Aug 1;4(8):e1000139. doi: 10.1371/journal.pgen.1000139.

PMID:
18670626
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Ecology and genomics of Bacillus subtilis.

Earl AM, Losick R, Kolter R.

Trends Microbiol. 2008 Jun;16(6):269-75. doi: 10.1016/j.tim.2008.03.004. Epub 2008 May 28. Review.

PMID:
18467096
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Visualization of comparative genomic analyses by BLAST score ratio.

Rasko DA, Myers GS, Ravel J.

BMC Bioinformatics. 2005 Jan 5;6:2.

PMID:
15634352
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Mauve: multiple alignment of conserved genomic sequence with rearrangements.

Darling AC, Mau B, Blattner FR, Perna NT.

Genome Res. 2004 Jul;14(7):1394-403.

PMID:
15231754
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Design of a compartmentalized shotgun assembler for the human genome.

Huson DH, Reinert K, Kravitz SA, Remington KA, Delcher AL, Dew IM, Flanigan M, Halpern AL, Lai Z, Mobarry CM, Sutton GG, Myers EW.

Bioinformatics. 2001;17 Suppl 1:S132-9.

PMID:
11473002
[PubMed - indexed for MEDLINE]
Free Article
14.
15.

The complete genome sequence of the gram-positive bacterium Bacillus subtilis.

Kunst F, Ogasawara N, Moszer I, Albertini AM, Alloni G, Azevedo V, Bertero MG, Bessières P, Bolotin A, Borchert S, Borriss R, Boursier L, Brans A, Braun M, Brignell SC, Bron S, Brouillet S, Bruschi CV, Caldwell B, Capuano V, Carter NM, Choi SK, Cordani JJ, Connerton IF, Cummings NJ, Daniel RA, Denziot F, Devine KM, Düsterhöft A, Ehrlich SD, Emmerson PT, Entian KD, Errington J, Fabret C, Ferrari E, Foulger D, Fritz C, Fujita M, Fujita Y, Fuma S, Galizzi A, Galleron N, Ghim SY, Glaser P, Goffeau A, Golightly EJ, Grandi G, Guiseppi G, Guy BJ, Haga K, Haiech J, Harwood CR, Hènaut A, Hilbert H, Holsappel S, Hosono S, Hullo MF, Itaya M, Jones L, Joris B, Karamata D, Kasahara Y, Klaerr-Blanchard M, Klein C, Kobayashi Y, Koetter P, Koningstein G, Krogh S, Kumano M, Kurita K, Lapidus A, Lardinois S, Lauber J, Lazarevic V, Lee SM, Levine A, Liu H, Masuda S, Mauël C, Médigue C, Medina N, Mellado RP, Mizuno M, Moestl D, Nakai S, Noback M, Noone D, O'Reilly M, Ogawa K, Ogiwara A, Oudega B, Park SH, Parro V, Pohl TM, Portelle D, Porwollik S, Prescott AM, Presecan E, Pujic P, Purnelle B, Rapoport G, Rey M, Reynolds S, Rieger M, Rivolta C, Rocha E, Roche B, Rose M, Sadaie Y, Sato T, Scanlan E, Schleich S, Schroeter R, Scoffone F, Sekiguchi J, Sekowska A, Seror SJ, Serror P, Shin BS, Soldo B, Sorokin A, Tacconi E, Takagi T, Takahashi H, Takemaru K, Takeuchi M, Tamakoshi A, Tanaka T, Terpstra P, Togoni A, Tosato V, Uchiyama S, Vandebol M, Vannier F, Vassarotti A, Viari A, Wambutt R, Wedler H, Weitzenegger T, Winters P, Wipat A, Yamamoto H, Yamane K, Yasumoto K, Yata K, Yoshida K, Yoshikawa HF, Zumstein E, Yoshikawa H, Danchin A.

Nature. 1997 Nov 20;390(6657):249-56.

PMID:
9384377
[PubMed - indexed for MEDLINE]
16.

Bacillus vallismortis sp. nov., a close relative of Bacillus subtilis, isolated from soil in Death Valley, California.

Roberts MS, Nakamura LK, Cohan FM.

Int J Syst Bacteriol. 1996 Apr;46(2):470-5.

PMID:
8934905
[PubMed - indexed for MEDLINE]
Free Article
17.

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