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Items: 1 to 20 of 59

1.

MicroRNAs and their isomiRs function cooperatively to target common biological pathways.

Cloonan N, Wani S, Xu Q, Gu J, Lea K, Heater S, Barbacioru C, Steptoe AL, Martin HC, Nourbakhsh E, Krishnan K, Gardiner B, Wang X, Nones K, Steen JA, Matigian NA, Wood DL, Kassahn KS, Waddell N, Shepherd J, Lee C, Ichikawa J, McKernan K, Bramlett K, Kuersten S, Grimmond SM.

Genome Biol. 2011 Dec 30;12(12):R126. doi: 10.1186/gb-2011-12-12-r126.

2.

Small RNA profiling of Dengue virus-mosquito interactions implicates the PIWI RNA pathway in anti-viral defense.

Hess AM, Prasad AN, Ptitsyn A, Ebel GD, Olson KE, Barbacioru C, Monighetti C, Campbell CL.

BMC Microbiol. 2011 Feb 28;11:45. doi: 10.1186/1471-2180-11-45.

3.

RNA sequencing: advances, challenges and opportunities.

Ozsolak F, Milos PM.

Nat Rev Genet. 2011 Feb;12(2):87-98. doi: 10.1038/nrg2934. Epub 2010 Dec 30. Review.

4.

Endogenous siRNAs and noncoding RNA-derived small RNAs are expressed in adult mouse hippocampus and are up-regulated in olfactory discrimination training.

Smalheiser NR, Lugli G, Thimmapuram J, Cook EH, Larson J.

RNA. 2011 Jan;17(1):166-81. doi: 10.1261/rna.2123811. Epub 2010 Nov 2.

5.

Human box C/D snoRNAs with miRNA like functions: expanding the range of regulatory RNAs.

Brameier M, Herwig A, Reinhardt R, Walter L, Gruber J.

Nucleic Acids Res. 2011 Jan;39(2):675-86. doi: 10.1093/nar/gkq776. Epub 2010 Sep 15.

6.

Human tRNA-derived small RNAs in the global regulation of RNA silencing.

Haussecker D, Huang Y, Lau A, Parameswaran P, Fire AZ, Kay MA.

RNA. 2010 Apr;16(4):673-95. doi: 10.1261/rna.2000810. Epub 2010 Feb 24.

7.

Angiogenin-induced tRNA-derived stress-induced RNAs promote stress-induced stress granule assembly.

Emara MM, Ivanov P, Hickman T, Dawra N, Tisdale S, Kedersha N, Hu GF, Anderson P.

J Biol Chem. 2010 Apr 2;285(14):10959-68. doi: 10.1074/jbc.M109.077560. Epub 2010 Feb 3.

8.

A sensitive non-radioactive northern blot method to detect small RNAs.

Kim SW, Li Z, Moore PS, Monaghan AP, Chang Y, Nichols M, John B.

Nucleic Acids Res. 2010 Apr;38(7):e98. doi: 10.1093/nar/gkp1235. Epub 2010 Jan 15.

9.

The UCSC Genome Browser.

Karolchik D, Hinrichs AS, Kent WJ.

Curr Protoc Bioinformatics. 2009 Dec;Chapter 1:Unit1.4. doi: 10.1002/0471250953.bi0104s28.

10.

A novel class of small RNAs: tRNA-derived RNA fragments (tRFs).

Lee YS, Shibata Y, Malhotra A, Dutta A.

Genes Dev. 2009 Nov 15;23(22):2639-49. doi: 10.1101/gad.1837609.

11.

Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs.

Cole C, Sobala A, Lu C, Thatcher SR, Bowman A, Brown JW, Green PJ, Barton GJ, Hutvagner G.

RNA. 2009 Dec;15(12):2147-60. doi: 10.1261/rna.1738409. Epub 2009 Oct 22.

12.

Characterization of viral and human RNAs smaller than canonical MicroRNAs.

Li Z, Kim SW, Lin Y, Moore PS, Chang Y, John B.

J Virol. 2009 Dec;83(24):12751-8. doi: 10.1128/JVI.01325-09. Epub 2009 Oct 7.

13.

Widespread shortening of 3'UTRs by alternative cleavage and polyadenylation activates oncogenes in cancer cells.

Mayr C, Bartel DP.

Cell. 2009 Aug 21;138(4):673-84. doi: 10.1016/j.cell.2009.06.016.

14.

RNA secondary structure analysis using the Vienna RNA package.

Hofacker IL.

Curr Protoc Bioinformatics. 2009 Jun;Chapter 12:Unit12.2. doi: 10.1002/0471250953.bi1202s26.

PMID:
19496057
15.

Small RNAs derived from snoRNAs.

Taft RJ, Glazov EA, Lassmann T, Hayashizaki Y, Carninci P, Mattick JS.

RNA. 2009 Jul;15(7):1233-40. doi: 10.1261/rna.1528909. Epub 2009 May 27.

16.

qiRNA is a new type of small interfering RNA induced by DNA damage.

Lee HC, Chang SS, Choudhary S, Aalto AP, Maiti M, Bamford DH, Liu Y.

Nature. 2009 May 14;459(7244):274-7. doi: 10.1038/nature08041.

17.

VARNA: Interactive drawing and editing of the RNA secondary structure.

Darty K, Denise A, Ponty Y.

Bioinformatics. 2009 Aug 1;25(15):1974-5. doi: 10.1093/bioinformatics/btp250. Epub 2009 Apr 27.

18.

Tiny RNAs associated with transcription start sites in animals.

Taft RJ, Glazov EA, Cloonan N, Simons C, Stephen S, Faulkner GJ, Lassmann T, Forrest AR, Grimmond SM, Schroder K, Irvine K, Arakawa T, Nakamura M, Kubosaki A, Hayashida K, Kawazu C, Murata M, Nishiyori H, Fukuda S, Kawai J, Daub CO, Hume DA, Suzuki H, Orlando V, Carninci P, Hayashizaki Y, Mattick JS.

Nat Genet. 2009 May;41(5):572-8. doi: 10.1038/ng.312. Epub 2009 Apr 19. Erratum in: Nat Genet. 2009 Jul;41(7):859.

PMID:
19377478
19.

The RNase Rny1p cleaves tRNAs and promotes cell death during oxidative stress in Saccharomyces cerevisiae.

Thompson DM, Parker R.

J Cell Biol. 2009 Apr 6;185(1):43-50. doi: 10.1083/jcb.200811119. Epub 2009 Mar 30.

20.

Angiogenin cleaves tRNA and promotes stress-induced translational repression.

Yamasaki S, Ivanov P, Hu GF, Anderson P.

J Cell Biol. 2009 Apr 6;185(1):35-42. doi: 10.1083/jcb.200811106. Epub 2009 Mar 30.

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