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Results: 1 to 20 of 85

1.

Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers.

Wei W, Qi X, Wang L, Zhang Y, Hua W, Li D, Lv H, Zhang X.

BMC Genomics. 2011 Sep 19;12:451. doi: 10.1186/1471-2164-12-451.

PMID:
21929789
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Multiple reference genomes and transcriptomes for Arabidopsis thaliana.

Gan X, Stegle O, Behr J, Steffen JG, Drewe P, Hildebrand KL, Lyngsoe R, Schultheiss SJ, Osborne EJ, Sreedharan VT, Kahles A, Bohnert R, Jean G, Derwent P, Kersey P, Belfield EJ, Harberd NP, Kemen E, Toomajian C, Kover PX, Clark RM, R├Ątsch G, Mott R.

Nature. 2011 Aug 28;477(7365):419-23. doi: 10.1038/nature10414.

PMID:
21874022
[PubMed - indexed for MEDLINE]
3.

Defining the transcriptome assembly and its use for genome dynamics and transcriptome profiling studies in pigeonpea (Cajanus cajan L.).

Dubey A, Farmer A, Schlueter J, Cannon SB, Abernathy B, Tuteja R, Woodward J, Shah T, Mulasmanovic B, Kudapa H, Raju NL, Gothalwal R, Pande S, Xiao Y, Town CD, Singh NK, May GD, Jackson S, Varshney RK.

DNA Res. 2011 Jun;18(3):153-64. doi: 10.1093/dnares/dsr007. Epub 2011 May 12.

PMID:
21565938
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

An RNA isolation system for plant tissues rich in secondary metabolites.

Ghawana S, Paul A, Kumar H, Kumar A, Singh H, Bhardwaj PK, Rani A, Singh RS, Raizada J, Singh K, Kumar S.

BMC Res Notes. 2011 Mar 28;4:85. doi: 10.1186/1756-0500-4-85.

PMID:
21443767
[PubMed]
Free PMC Article
5.

Regulation of starch biosynthesis in response to a fluctuating environment.

Geigenberger P.

Plant Physiol. 2011 Apr;155(4):1566-77. doi: 10.1104/pp.110.170399. Epub 2011 Mar 4. Review. No abstract available.

PMID:
21378102
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds.

Shi CY, Yang H, Wei CL, Yu O, Zhang ZZ, Jiang CJ, Sun J, Li YY, Chen Q, Xia T, Wan XC.

BMC Genomics. 2011 Feb 28;12:131. doi: 10.1186/1471-2164-12-131.

PMID:
21356090
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Effect of altitude on picroside content in core collections of Picrorhiza kurrooa from the north western Himalayas.

Katoch M, Fazli IS, Suri KA, Ahuja A, Qazi GN.

J Nat Med. 2011 Jul;65(3-4):578-82. doi: 10.1007/s11418-010-0491-9. Epub 2011 Feb 24.

PMID:
21347670
[PubMed - indexed for MEDLINE]
8.

The maternal and early embryonic transcriptome of the milkweed bug Oncopeltus fasciatus.

Ewen-Campen B, Shaner N, Panfilio KA, Suzuki Y, Roth S, Extavour CG.

BMC Genomics. 2011 Jan 25;12:61. doi: 10.1186/1471-2164-12-61.

PMID:
21266083
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

De novo assembly of chickpea transcriptome using short reads for gene discovery and marker identification.

Garg R, Patel RK, Tyagi AK, Jain M.

DNA Res. 2011 Feb;18(1):53-63. doi: 10.1093/dnares/dsq028. Epub 2011 Jan 7.

PMID:
21217129
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

CDD: a Conserved Domain Database for the functional annotation of proteins.

Marchler-Bauer A, Lu S, Anderson JB, Chitsaz F, Derbyshire MK, DeWeese-Scott C, Fong JH, Geer LY, Geer RC, Gonzales NR, Gwadz M, Hurwitz DI, Jackson JD, Ke Z, Lanczycki CJ, Lu F, Marchler GH, Mullokandov M, Omelchenko MV, Robertson CL, Song JS, Thanki N, Yamashita RA, Zhang D, Zhang N, Zheng C, Bryant SH.

Nucleic Acids Res. 2011 Jan;39(Database issue):D225-9. doi: 10.1093/nar/gkq1189. Epub 2010 Nov 24.

PMID:
21109532
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

De novo characterization of a whitefly transcriptome and analysis of its gene expression during development.

Wang XW, Luan JB, Li JM, Bao YY, Zhang CX, Liu SS.

BMC Genomics. 2010 Jun 24;11:400. doi: 10.1186/1471-2164-11-400.

PMID:
20573269
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Characterization of transcriptional complexity during berry development in Vitis vinifera using RNA-Seq.

Zenoni S, Ferrarini A, Giacomelli E, Xumerle L, Fasoli M, Malerba G, Bellin D, Pezzotti M, Delledonne M.

Plant Physiol. 2010 Apr;152(4):1787-95. doi: 10.1104/pp.109.149716. Epub 2010 Jan 29.

PMID:
20118272
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Light and temperature regulated terpene biosynthesis: hepatoprotective monoterpene picroside accumulation in Picrorhiza kurrooa.

Kawoosa T, Singh H, Kumar A, Sharma SK, Devi K, Dutt S, Vats SK, Sharma M, Ahuja PS, Kumar S.

Funct Integr Genomics. 2010 Aug;10(3):393-404. doi: 10.1007/s10142-009-0152-9. Epub 2010 Jan 14.

PMID:
20076984
[PubMed - indexed for MEDLINE]
14.

De novo assembly of human genomes with massively parallel short read sequencing.

Li R, Zhu H, Ruan J, Qian W, Fang X, Shi Z, Li Y, Li S, Shan G, Kristiansen K, Li S, Yang H, Wang J, Wang J.

Genome Res. 2010 Feb;20(2):265-72. doi: 10.1101/gr.097261.109. Epub 2009 Dec 17.

PMID:
20019144
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Applications of new sequencing technologies for transcriptome analysis.

Morozova O, Hirst M, Marra MA.

Annu Rev Genomics Hum Genet. 2009;10:135-51. doi: 10.1146/annurev-genom-082908-145957. Review.

PMID:
19715439
[PubMed - indexed for MEDLINE]
16.

Transcriptome sequencing of the Microarray Quality Control (MAQC) RNA reference samples using next generation sequencing.

Mane SP, Evans C, Cooper KL, Crasta OR, Folkerts O, Hutchison SK, Harkins TT, Thierry-Mieg D, Thierry-Mieg J, Jensen RV.

BMC Genomics. 2009 Jun 12;10:264. doi: 10.1186/1471-2164-10-264.

PMID:
19523228
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Estimating accuracy of RNA-Seq and microarrays with proteomics.

Fu X, Fu N, Guo S, Yan Z, Xu Y, Hu H, Menzel C, Chen W, Li Y, Zeng R, Khaitovich P.

BMC Genomics. 2009 Apr 16;10:161. doi: 10.1186/1471-2164-10-161.

PMID:
19371429
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

ABySS: a parallel assembler for short read sequence data.

Simpson JT, Wong K, Jackman SD, Schein JE, Jones SJ, Birol I.

Genome Res. 2009 Jun;19(6):1117-23. doi: 10.1101/gr.089532.108. Epub 2009 Feb 27.

PMID:
19251739
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

High temperature-mediated adaptations in plant architecture require the bHLH transcription factor PIF4.

Koini MA, Alvey L, Allen T, Tilley CA, Harberd NP, Whitelam GC, Franklin KA.

Curr Biol. 2009 Mar 10;19(5):408-13. doi: 10.1016/j.cub.2009.01.046. Epub 2009 Feb 26.

PMID:
19249207
[PubMed - indexed for MEDLINE]
Free Article
20.

Statistical inferences for isoform expression in RNA-Seq.

Jiang H, Wong WH.

Bioinformatics. 2009 Apr 15;25(8):1026-32. doi: 10.1093/bioinformatics/btp113. Epub 2009 Feb 25.

PMID:
19244387
[PubMed - indexed for MEDLINE]
Free PMC Article

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