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Items: 18

1.

Connecting threads: epigenetics and metabolism.

Katada S, Imhof A, Sassone-Corsi P.

Cell. 2012 Jan 20;148(1-2):24-8. doi: 10.1016/j.cell.2012.01.001.

2.

Cell-type-specific nuclei purification from whole animals for genome-wide expression and chromatin profiling.

Steiner FA, Talbert PB, Kasinathan S, Deal RB, Henikoff S.

Genome Res. 2012 Apr;22(4):766-77. doi: 10.1101/gr.131748.111. Epub 2012 Jan 4.

3.

Polycomb-repressed genes have permissive enhancers that initiate reprogramming.

Taberlay PC, Kelly TK, Liu CC, You JS, De Carvalho DD, Miranda TB, Zhou XJ, Liang G, Jones PA.

Cell. 2011 Dec 9;147(6):1283-94. doi: 10.1016/j.cell.2011.10.040.

4.

Heat shock reduces stalled RNA polymerase II and nucleosome turnover genome-wide.

Teves SS, Henikoff S.

Genes Dev. 2011 Nov 15;25(22):2387-97. doi: 10.1101/gad.178079.111.

5.

Epigenome characterization at single base-pair resolution.

Henikoff JG, Belsky JA, Krassovsky K, MacAlpine DM, Henikoff S.

Proc Natl Acad Sci U S A. 2011 Nov 8;108(45):18318-23. doi: 10.1073/pnas.1110731108. Epub 2011 Oct 24.

6.

Transgenerational epigenetic instability is a source of novel methylation variants.

Schmitz RJ, Schultz MD, Lewsey MG, O'Malley RC, Urich MA, Libiger O, Schork NJ, Ecker JR.

Science. 2011 Oct 21;334(6054):369-73. doi: 10.1126/science.1212959. Epub 2011 Sep 15.

7.

OCT4 establishes and maintains nucleosome-depleted regions that provide additional layers of epigenetic regulation of its target genes.

You JS, Kelly TK, De Carvalho DD, Taberlay PC, Liang G, Jones PA.

Proc Natl Acad Sci U S A. 2011 Aug 30;108(35):14497-502. doi: 10.1073/pnas.1111309108. Epub 2011 Aug 15.

8.

DNA methylation directly silences genes with non-CpG island promoters and establishes a nucleosome occupied promoter.

Han H, Cortez CC, Yang X, Nichols PW, Jones PA, Liang G.

Hum Mol Genet. 2011 Nov 15;20(22):4299-310. doi: 10.1093/hmg/ddr356. Epub 2011 Aug 11.

9.

SIRT6: a master epigenetic gatekeeper of glucose metabolism.

Zhong L, Mostoslavsky R.

Transcription. 2010 Jul-Aug;1(1):17-21. doi: 10.4161/trns.1.1.12143.

10.

A simple method for gene expression and chromatin profiling of individual cell types within a tissue.

Deal RB, Henikoff S.

Dev Cell. 2010 Jun 15;18(6):1030-40. doi: 10.1016/j.devcel.2010.05.013. Erratum in: Dev Cell. 2011 Dec 13;21(6):1179.

11.

Genome-wide kinetics of nucleosome turnover determined by metabolic labeling of histones.

Deal RB, Henikoff JG, Henikoff S.

Science. 2010 May 28;328(5982):1161-4. doi: 10.1126/science.1186777.

12.

NER factors are recruited to active promoters and facilitate chromatin modification for transcription in the absence of exogenous genotoxic attack.

Le May N, Mota-Fernandes D, Vélez-Cruz R, Iltis I, Biard D, Egly JM.

Mol Cell. 2010 Apr 9;38(1):54-66. doi: 10.1016/j.molcel.2010.03.004.

13.

The histone deacetylase Sirt6 regulates glucose homeostasis via Hif1alpha.

Zhong L, D'Urso A, Toiber D, Sebastian C, Henry RE, Vadysirisack DD, Guimaraes A, Marinelli B, Wikstrom JD, Nir T, Clish CB, Vaitheesvaran B, Iliopoulos O, Kurland I, Dor Y, Weissleder R, Shirihai OS, Ellisen LW, Espinosa JM, Mostoslavsky R.

Cell. 2010 Jan 22;140(2):280-93. doi: 10.1016/j.cell.2009.12.041.

14.

Establishment of histone modifications after chromatin assembly.

Scharf AN, Barth TK, Imhof A.

Nucleic Acids Res. 2009 Aug;37(15):5032-40. doi: 10.1093/nar/gkp518. Epub 2009 Jun 18.

15.

Circadian control of the NAD+ salvage pathway by CLOCK-SIRT1.

Nakahata Y, Sahar S, Astarita G, Kaluzova M, Sassone-Corsi P.

Science. 2009 May 1;324(5927):654-7. doi: 10.1126/science.1170803. Epub 2009 Mar 12.

16.

A phosphatase cascade by which rewarding stimuli control nucleosomal response.

Stipanovich A, Valjent E, Matamales M, Nishi A, Ahn JH, Maroteaux M, Bertran-Gonzalez J, Brami-Cherrier K, Enslen H, Corbillé AG, Filhol O, Nairn AC, Greengard P, Hervé D, Girault JA.

Nature. 2008 Jun 12;453(7197):879-84. doi: 10.1038/nature06994. Epub 2008 May 21.

17.

Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome.

Heintzman ND, Stuart RK, Hon G, Fu Y, Ching CW, Hawkins RD, Barrera LO, Van Calcar S, Qu C, Ching KA, Wang W, Weng Z, Green RD, Crawford GE, Ren B.

Nat Genet. 2007 Mar;39(3):311-8. Epub 2007 Feb 4.

PMID:
17277777
18.

Genomic instability and aging-like phenotype in the absence of mammalian SIRT6.

Mostoslavsky R, Chua KF, Lombard DB, Pang WW, Fischer MR, Gellon L, Liu P, Mostoslavsky G, Franco S, Murphy MM, Mills KD, Patel P, Hsu JT, Hong AL, Ford E, Cheng HL, Kennedy C, Nunez N, Bronson R, Frendewey D, Auerbach W, Valenzuela D, Karow M, Hottiger MO, Hursting S, Barrett JC, Guarente L, Mulligan R, Demple B, Yancopoulos GD, Alt FW.

Cell. 2006 Jan 27;124(2):315-29.

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