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Results: 1 to 20 of 116

References for PMC Articles for PubMed (Select 22412381)

1.

The T-box transcription factor Eomesodermin acts upstream of Mesp1 to specify cardiac mesoderm during mouse gastrulation.

Costello I, Pimeisl IM, Dräger S, Bikoff EK, Robertson EJ, Arnold SJ.

Nat Cell Biol. 2011 Aug 7;13(9):1084-91. doi: 10.1038/ncb2304.

PMID:
21822279
2.

Mapping and analysis of chromatin state dynamics in nine human cell types.

Ernst J, Kheradpour P, Mikkelsen TS, Shoresh N, Ward LD, Epstein CB, Zhang X, Wang L, Issner R, Coyne M, Ku M, Durham T, Kellis M, Bernstein BE.

Nature. 2011 May 5;473(7345):43-9. doi: 10.1038/nature09906. Epub 2011 Mar 23.

3.

A cis-regulatory map of the Drosophila genome.

Nègre N, Brown CD, Ma L, Bristow CA, Miller SW, Wagner U, Kheradpour P, Eaton ML, Loriaux P, Sealfon R, Li Z, Ishii H, Spokony RF, Chen J, Hwang L, Cheng C, Auburn RP, Davis MB, Domanus M, Shah PK, Morrison CA, Zieba J, Suchy S, Senderowicz L, Victorsen A, Bild NA, Grundstad AJ, Hanley D, MacAlpine DM, Mannervik M, Venken K, Bellen H, White R, Gerstein M, Russell S, Grossman RL, Ren B, Posakony JW, Kellis M, White KP.

Nature. 2011 Mar 24;471(7339):527-31. doi: 10.1038/nature09990.

4.

Enhancer function: new insights into the regulation of tissue-specific gene expression.

Ong CT, Corces VG.

Nat Rev Genet. 2011 Apr;12(4):283-93. doi: 10.1038/nrg2957. Epub 2011 Mar 1. Review.

5.

UniPROBE, update 2011: expanded content and search tools in the online database of protein-binding microarray data on protein-DNA interactions.

Robasky K, Bulyk ML.

Nucleic Acids Res. 2011 Jan;39(Database issue):D124-8. doi: 10.1093/nar/gkq992. Epub 2010 Oct 30.

6.

Dynamic evolution of precise regulatory encodings creates the clustered site signature of enhancers.

Crocker J, Potter N, Erives A.

Nat Commun. 2010 Oct 19;1:99. doi: 10.1038/ncomms1102.

7.

REDfly v3.0: toward a comprehensive database of transcriptional regulatory elements in Drosophila.

Gallo SM, Gerrard DT, Miner D, Simich M, Des Soye B, Bergman CM, Halfon MS.

Nucleic Acids Res. 2011 Jan;39(Database issue):D118-23. doi: 10.1093/nar/gkq999. Epub 2010 Oct 21.

8.

ChIP-Seq identification of weakly conserved heart enhancers.

Blow MJ, McCulley DJ, Li Z, Zhang T, Akiyama JA, Holt A, Plajzer-Frick I, Shoukry M, Wright C, Chen F, Afzal V, Bristow J, Ren B, Black BL, Rubin EM, Visel A, Pennacchio LA.

Nat Genet. 2010 Sep;42(9):806-10. doi: 10.1038/ng.650. Epub 2010 Aug 22.

9.

Diversification of muscle types: recent insights from Drosophila.

Tixier V, Bataillé L, Jagla K.

Exp Cell Res. 2010 Nov 1;316(18):3019-27. doi: 10.1016/j.yexcr.2010.07.013. Epub 2010 Jul 29. Review.

PMID:
20673829
10.

Genome-wide identification of cis-regulatory motifs and modules underlying gene coregulation using statistics and phylogeny.

Rouault H, Mazouni K, Couturier L, Hakim V, Schweisguth F.

Proc Natl Acad Sci U S A. 2010 Aug 17;107(33):14615-20. doi: 10.1073/pnas.1002876107. Epub 2010 Jul 29.

11.

Structural rules and complex regulatory circuitry constrain expression of a Notch- and EGFR-regulated eye enhancer.

Swanson CI, Evans NC, Barolo S.

Dev Cell. 2010 Mar 16;18(3):359-70. doi: 10.1016/j.devcel.2009.12.026.

12.

Small-sample precision of ROC-related estimates.

Hanczar B, Hua J, Sima C, Weinstein J, Bittner M, Dougherty ER.

Bioinformatics. 2010 Mar 15;26(6):822-30. doi: 10.1093/bioinformatics/btq037. Epub 2010 Feb 3.

13.

Genome-wide discovery of human heart enhancers.

Narlikar L, Sakabe NJ, Blanski AA, Arimura FE, Westlund JM, Nobrega MA, Ovcharenko I.

Genome Res. 2010 Mar;20(3):381-92. doi: 10.1101/gr.098657.109. Epub 2010 Jan 14.

14.

Multi-step control of muscle diversity by Hox proteins in the Drosophila embryo.

Enriquez J, Boukhatmi H, Dubois L, Philippakis AA, Bulyk ML, Michelson AM, Crozatier M, Vincent A.

Development. 2010 Feb;137(3):457-66. doi: 10.1242/dev.045286. Epub 2010 Jan 7.

15.

Combinatorial binding predicts spatio-temporal cis-regulatory activity.

Zinzen RP, Girardot C, Gagneur J, Braun M, Furlong EE.

Nature. 2009 Nov 5;462(7269):65-70. doi: 10.1038/nature08531.

PMID:
19890324
16.

Motif-blind, genome-wide discovery of cis-regulatory modules in Drosophila and mouse.

Kantorovitz MR, Kazemian M, Kinston S, Miranda-Saavedra D, Zhu Q, Robinson GE, Göttgens B, Halfon MS, Sinha S.

Dev Cell. 2009 Oct;17(4):568-79. doi: 10.1016/j.devcel.2009.09.002.

17.

Identifying cis-regulatory sequences by word profile similarity.

Leung G, Eisen MB.

PLoS One. 2009 Sep 4;4(9):e6901. doi: 10.1371/journal.pone.0006901.

18.

Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions.

MacArthur S, Li XY, Li J, Brown JB, Chu HC, Zeng L, Grondona BP, Hechmer A, Simirenko L, Keränen SV, Knowles DW, Stapleton M, Bickel P, Biggin MD, Eisen MB.

Genome Biol. 2009;10(7):R80. doi: 10.1186/gb-2009-10-7-r80. Epub 2009 Jul 23.

19.

Effects of sample size on robustness and prediction accuracy of a prognostic gene signature.

Kim SY.

BMC Bioinformatics. 2009 May 16;10:147. doi: 10.1186/1471-2105-10-147.

20.

A systematic analysis of Tinman function reveals Eya and JAK-STAT signaling as essential regulators of muscle development.

Liu YH, Jakobsen JS, Valentin G, Amarantos I, Gilmour DT, Furlong EE.

Dev Cell. 2009 Feb;16(2):280-91. doi: 10.1016/j.devcel.2009.01.006.

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